Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01954 ATGAGGACCCGTTTAGTCACCAAATGGGTCATCATCGTGGCCACGCTGTGTTTTTTCTTACAAAGCTTCTTCTTGGAATTGGAAGCCAAAAGCATTGACCCCTACAAGGTTCTTGGGGTTGATAAAAATGCAAGTCAGCGGGAAATTCAGAAGGCTTTCCATAAGCTCTCTCTCCAGTATCACCCTGACAAGAACAAAGACAAGGGTGCACAAGAGAAGTTTGCTCAGATCAATAATGCATACGAGATACTATCTGATGAAGAGAAGAGAAAGAATTATGACTTGTATGGAGATGAGAAAGGAAATCCTGGATTTGATACTGGCCATCCTGGAGGTCAGGGTGGATATACTTATTTCACAGGGGGTGGTCCTGGACATAGCAATTTTCACTTCAGACCAGGGGACTGGCAGGATACGGGTGGGCAGGGAGGCTCTAAGTCATTCTCCTTTTCCTTTGGTGGTGCTGGTGATTCGAATACTTTTGGATTTGGTTTGGATGATCTTTTGGGTGGTTTTTTTGGTGGTGGAGGGAGACAGTTTGGTGGTTTTGGAAGTTCAACTAGTTCAAAATCTGGGTCCAAGAGTTCCCCCAAAAGTTTAAGAGCCATAAATTTACACATCTACAAGAAAGAGATAGCTGATCAAGGGATGACCTGGCTTTTGTTATCTTATACACCCTCATTGAAAGGTGTCCAATACTTTGAATCCACTGCAGAGGAGGTTGCCAGTTCATTGCAAGGAGCTTTGAAGGTTGGAAGCATTAACTGTGAAAAGGAAGCCTCATTCTGTAAGGAGCTTGGTGTATATCCGCGCAAAGCTCCAAGGCTTTTTGTTTATTCTTACAAAGAGAATGAAAAGGGTTCTCTGGTGGAGTACAGTGGTGACTTGGCTGTTAAGAATTTGAAGGCTTTCTGTGTAGAACACTTGCCAAGGTTTTCAAAACGGACTGACTTGAATTATCTTGATCAATTTAGCACTACTGGAAAGTTGCCTAGGATGATGCTTCTCTCCACCAAGAAGGATACTCCTGTAATTTGGCGTGTTCTTAGTGGCTTGTATCACAAACGCATTACTTTAAGTGATGCAGAGGTGCATGATGTTTCGGATCCAAGAGTGAAAAGGCTAGGAGTTGATGCACTTCCAGCGATTGTAGGTTGGCTACCTAATGGAGAGAAGCGTGTTCTGAAAACAGGAATTTCTGTTAAAGATATAAAATCTGCAGTTCCTGATCTTAGTAAAGTCCTTGATAGTTTTGAAAAAATAAGTAAAAAGGAAGCAACAAGTCAGACCAAGAAGGCACAAACTGATTCAGAAGAGGGACATGTACAGTTGCTTTCTCGGTCAAACTTTGAGGTTCTTTGTGGTGAGAAAACTCCAGTCTGCATAATTGGTGCCTTCAGATCTTCTAAAGCTAGAGAAAAGCTAGAATCAATTCTCTCTTTGGTCTCTCAAAAGTCTTTGTCAAGAAGATCAAATCAAGGAGCCAGCTCTAGGGACTCCATTTCCTATGCTCTCTTAGATGCTTCAAAGCAACAGCAATTTCTAAATGCATTTAATAAAACAGGTTATAAAACAGCTTATAAATCATCAGATAAGTTGTTGATTGCCTACAAACCTAAGAGAGGGAAGTACACTGTATTTATGGGTGAAATGACAACAGAGGAGGTGGAGAATTTTATCAGCTCCGTTCTCAGTGGAGATATACCATTCAGAGAAACACGTGATAAGCCTGTACTCAAATAG 1743 0.4148 MRTRLVTKWVIIVATLCFFLQSFFLELEAKSIDPYKVLGVDKNASQREIQKAFHKLSLQYHPDKNKDKGAQEKFAQINNAYEILSDEEKRKNYDLYGDEKGNPGFDTGHPGGQGGYTYFTGGGPGHSNFHFRPGDWQDTGGQGGSKSFSFSFGGAGDSNTFGFGLDDLLGGFFGGGGRQFGGFGSSTSSKSGSKSSPKSLRAINLHIYKKEIADQGMTWLLLSYTPSLKGVQYFESTAEEVASSLQGALKVGSINCEKEASFCKELGVYPRKAPRLFVYSYKENEKGSLVEYSGDLAVKNLKAFCVEHLPRFSKRTDLNYLDQFSTTGKLPRMMLLSTKKDTPVIWRVLSGLYHKRITLSDAEVHDVSDPRVKRLGVDALPAIVGWLPNGEKRVLKTGISVKDIKSAVPDLSKVLDSFEKISKKEATSQTKKAQTDSEEGHVQLLSRSNFEVLCGEKTPVCIIGAFRSSKAREKLESILSLVSQKSLSRRSNQGASSRDSISYALLDASKQQQFLNAFNKTGYKTAYKSSDKLLIAYKPKRGKYTVFMGEMTTEEVENFISSVLSGDIPFRETRDKPVLK* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01954 580 SMART dnaj_3 32 89 IPR001623 -
Rops8g01954 580 CDD DnaJ 33 86 IPR001623 -
Rops8g01954 580 ProSitePatterns Nt-dnaJ domain signature. 74 93 IPR018253 -
Rops8g01954 580 MobiDBLite consensus disorder prediction 95 119 - -
Rops8g01954 580 SUPERFAMILY Chaperone J-domain 23 101 IPR036869 -
Rops8g01954 580 Gene3D Glutaredoxin 203 309 - -
Rops8g01954 580 PRINTS DnaJ domain signature 35 53 IPR001623 -
Rops8g01954 580 PRINTS DnaJ domain signature 53 68 IPR001623 -
Rops8g01954 580 PRINTS DnaJ domain signature 89 108 IPR001623 -
Rops8g01954 580 PRINTS DnaJ domain signature 69 89 IPR001623 -
Rops8g01954 580 Gene3D DnaJ domain 31 180 IPR036869 -
Rops8g01954 580 SUPERFAMILY Thioredoxin-like 208 310 IPR036249 -
Rops8g01954 580 ProSiteProfiles dnaJ domain profile. 33 97 IPR001623 -
Rops8g01954 580 Gene3D Glutaredoxin 441 570 - -
Rops8g01954 580 Pfam DnaJ domain 33 94 IPR001623 -
Rops8g01954 580 PANTHER DNAJ PROTEIN ERDJ3A 2 580 - -
Rops8g01954 580 SUPERFAMILY Thioredoxin-like 440 569 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01954 Rops-Chr8 44772981 44776374 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01954 35 96 C2H2 Transcription Factor Family AT1G74250 41.176 3.60e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01954 - - gmx:100796871 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01954 8 44772981 44776374 Rops8g01954 8 44772981 44776374 ECH