Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01928 ATGGGTTCTACTCGCTCAGGTGGCTCTGCCACTGCCAAAGAACGCCTACGCTGGACACAAGAACTCCATGATCGCTTTGTGGAGGCTGTAAATAGGCTTGGGGGCCCTGATAGGGCAACACCAAAAGGTATATTGAAGGAAATGAAGGATATTGGTGTTTCTGAATTAAACATATATCACGTCAAAAGTCACTTGCAGAAATACAGGATCTCCAAATTGACTCCAGAGTCCACCACAAGAGGAAGGCTTGAGAAGAGAAGCATATCAGATATACTGCCAAATTTTAGTTCTATATCTGCTCTTCAGCTAAAGGAACTTCTTCAAATGCAGACAGAGGAGCAAAAACGCTTGAACGATAAAGTTGAGGTTCCAAGAAGCTTGAAGCTAAAAATTGAAGCACAAGGAAAGTACCTGGAGAGAATTGGCCAAAATTATCATAGCAGAACAATCATTGGAAAACCTTGCAAGCCTTTTATTATTGCATCTGCACCTCTTCCTTCTCTTTCTGAAGAATCTGAATCTTTGGAAACACAACCTGAGAAAGAGCATGGATCAACCAAAAAACAAAGGATAGAAGAGGAGGGTGTTTTTCCAACAAGTTTTGAACTTGGATCATCATCCACCTCACCAGAATTCTATAACCAAACATGGAATCTTTCTTGGAGCCAGCTAGCAGCAGCATGCCAATCACCTTTGGTGCCCCATTTCTTATTATAA 717 0.4156 MGSTRSGGSATAKERLRWTQELHDRFVEAVNRLGGPDRATPKGILKEMKDIGVSELNIYHVKSHLQKYRISKLTPESTTRGRLEKRSISDILPNFSSISALQLKELLQMQTEEQKRLNDKVEVPRSLKLKIEAQGKYLERIGQNYHSRTIIGKPCKPFIIASAPLPSLSEESESLETQPEKEHGSTKKQRIEEEGVFPTSFELGSSSTSPEFYNQTWNLSWSQLAAACQSPLVPHFLL* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01928 238 Gene3D - 12 73 - -
Rops8g01928 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 73 IPR017930 -
Rops8g01928 238 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 10 149 IPR044848 GO:0003700
Rops8g01928 238 MobiDBLite consensus disorder prediction 174 193 - -
Rops8g01928 238 Pfam Myb-like DNA-binding domain 16 69 IPR001005 -
Rops8g01928 238 MobiDBLite consensus disorder prediction 169 193 - -
Rops8g01928 238 NCBIfam myb-like DNA-binding domain, SHAQKYF class 13 71 IPR006447 GO:0003677
Rops8g01928 238 Coils Coil 100 120 - -
Rops8g01928 238 FunFam Two-component response regulator 9 74 - -
Rops8g01928 238 SUPERFAMILY Homeodomain-like 12 70 IPR009057 -
Rops8g01928 238 Pfam MYB-CC type transfactor, LHEQLE motif 102 141 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01928 Rops-Chr8 43963446 43966711 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01928 3 141 G2-like Transcription Factor Family AT4G28610 47.586 1.38e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops8g01928 Myb_DNA-binding 2.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01928 - - psat:127127459 311.227