Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01927 ATGGAAATGGCTTCTAGCCCTCGCACCGTTGAAGAGATCTTCAAGGACTATAGCGCTAGAAGAACTGCCCTTGTTCGTGCTCTCACTCAAGATGTTGATGAATTTTACGGGCTCTGTGATCCAGATAAGGAGAACTTGTGCCTCTATGGACATCCAAATGACAACTGGGAGGTAACTCTACCAGCAGAGGAAGTTCCACCAGAGCTCCCTGAGCCAGCTCTTGGAATCAATTTTGCTAGAGATGGCATGAACCGCAGGGACTGGCTTTCTCTGGTTGCCGTGCACAGTGATTCGTGGTTGCTTTCTGTGGCCTTTTATCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAACGTTTATTTAGTTTGATCAATGATCTTCCCACCGTTTTTGAAGTTGTGACTGACAGGAAACCAATTAAGGACAAGCCCACTGCAGATAGTGGAAGCAAATCCCGAGGAAGCACCAAGAGATCTAGTGATGGGCAAGTTAAAAGCAACCCAAAGTTTGCAGATGAGGGTTATGAGGAGGATGAAGATGAGCATAGTGAAACACTTTGTGGGAGCTGTGGTGGAAATTACAATGCTGATGAGTTTTGGATTGGCTGTGATATATGTGAGAGGTGGTTCCATGGGAAATGTGTGAAGATTACTCCTGCAAAGGCTGAGAGCATAAAGCAATATAAGTGTCCATCATGCAGCATGAAGAGGGGCAGGCCTTAG 720 0.4611 MEMASSPRTVEEIFKDYSARRTALVRALTQDVDEFYGLCDPDKENLCLYGHPNDNWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTDRKPIKDKPTADSGSKSRGSTKRSSDGQVKSNPKFADEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSMKRGRP* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01927 239 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Rops8g01927 239 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Rops8g01927 239 CDD PHD_AL_plant 185 235 IPR044104 -
Rops8g01927 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 233 IPR013083 -
Rops8g01927 239 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
Rops8g01927 239 SUPERFAMILY FYVE/PHD zinc finger 174 237 IPR011011 -
Rops8g01927 239 SMART PHD_3 185 233 IPR001965 -
Rops8g01927 239 MobiDBLite consensus disorder prediction 148 165 - -
Rops8g01927 239 FunFam PHD finger alfin-like protein 178 234 - -
Rops8g01927 239 PANTHER CPG BINDING PROTEIN 6 238 IPR045104 GO:0006355|GO:0042393
Rops8g01927 239 MobiDBLite consensus disorder prediction 139 176 - -
Rops8g01927 239 Pfam PHD-finger 186 234 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01927 Rops-Chr8 43957382 43961979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01927 4 238 Alfin-like Transcription Factor Family AT5G05610 77.542 2.81e-122 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Rops8g01927 Alfin 6.7e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01927 K26274 - gmx:100793126 463.381