Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01921 ATGGGTTCTTCTCACCAACAAGAACCATGGCTTTTGGAGAATGGTAACCCCAAAGTATTGACCAAGGAGACGAGGCATGGTCATGGCAGAAGTAGAACTGCACACAACATGTCCTCTTCTTCCTTGAGGAAGAAAAGTGACCTCACTCTTGTGTCTAAGGTTCCATGTGCCTTGCTTAGAAACTTGTTGATTAACATTCAAGAGGTTATTCTTGGAACCAAGCTTTTCATTCTCTTCCCTGCAATTCCTCTTGCCATCGTTGCTGAATGCTTTGGCTTAGGAAGATCCTGGGTTTTTGTATTGAGCTTACTTGGGCTTACCCCACTTGCTGAACGTGTAAGCTTCCTCACAGAACAAGTTGCCTATTACACAGGTCCTACAGTTGGAGGACTTCTAAATGCGACATGTGGGAATGTTACTGAGCTTATCATAGCGATATTTGCTCTTAGCAGTAACAAAATTGCTGTGGTCAAGTATTCTCTCTTGGGTTCCGTCCTTTCAAACCTTCTTCTGGTTCTTGGAACCTCTCTATTCTGTGGTGGCATTGCAAACCTTAGAGTGGAACAAAAATACGACAGGAGACAAGCAGATGTGAACTCACTTATGTTGCTGCTAGCATTGTTGTGCCACTTGCTTCCATTGCTGTTCAGATATAGTGCTGCCTCAACTGCTCTCACTGTAGAACCATCACTCTACTTGTCAAGAGCTTCTAGCATTGTGATGTTGATTGCATATATTGCTTACCTTGTGTTTCAACTGTGGACACACCGGCAATTATTTGAAGCTGAAGATGAAGATGAAGATGGCAACAATGGTTCAGAAGAACAAGCTGTGATTGGATTCTGGAGTGGCTTTGCTTGGTTGGTTGGGATGACTGTATTCATTGCTTTGTTGTCAGAATATGTGGTGGATACAATTGAGGATGCATCAGATTCATGGGGTCTATCTGTTAGCTTCCTCAGTATAATCTTGCTACCAATAGTTGGCAATGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGACATTTCATTAGGTGTTGCATTGGGTTCTGCAACTCAAATTGCCATGTTTGTGGTTCCCCTATGTGTGACCGTTGCTTGGATAATGGGTGTCAAAATGGACTTGAACTTCAACCTCCTAGAGACAGGTTCTCTTGCTCTAGCAATACTAGCCACAGCCTTCACTTTACAGGATGGTACTTCTCACTACATGAAAGGTCTTGTTCTCCTGCTTTGCTACATTGTTATTGGGGCTTGCTTCTTCGTTCAAAGAACACCCTTTAACCAAAATGATGTTACTAACGTCACACTTAAATCAACCACTGATGCAGTTTTAAGTGCCTAA 1362 0.4273 MGSSHQQEPWLLENGNPKVLTKETRHGHGRSRTAHNMSSSSLRKKSDLTLVSKVPCALLRNLLINIQEVILGTKLFILFPAIPLAIVAECFGLGRSWVFVLSLLGLTPLAERVSFLTEQVAYYTGPTVGGLLNATCGNVTELIIAIFALSSNKIAVVKYSLLGSVLSNLLLVLGTSLFCGGIANLRVEQKYDRRQADVNSLMLLLALLCHLLPLLFRYSAASTALTVEPSLYLSRASSIVMLIAYIAYLVFQLWTHRQLFEAEDEDEDGNNGSEEQAVIGFWSGFAWLVGMTVFIALLSEYVVDTIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAMFVVPLCVTVAWIMGVKMDLNFNLLETGSLALAILATAFTLQDGTSHYMKGLVLLLCYIVIGACFFVQRTPFNQNDVTNVTLKSTTDAVLSA* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01921 453 MobiDBLite consensus disorder prediction 21 40 - -
Rops8g01921 453 FunFam Vacuolar cation/proton exchanger 126 270 - -
Rops8g01921 453 FunFam Vacuolar cation/proton exchanger 272 428 - -
Rops8g01921 453 Pfam Sodium/calcium exchanger protein 97 254 IPR004837 GO:0016020|GO:0055085
Rops8g01921 453 Pfam Sodium/calcium exchanger protein 284 422 IPR004837 GO:0016020|GO:0055085
Rops8g01921 453 Gene3D - 126 265 IPR044880 -
Rops8g01921 453 Gene3D - 271 428 IPR044880 -
Rops8g01921 453 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 23 432 IPR004713 GO:0006812|GO:0008324|GO:0016020
Rops8g01921 453 NCBIfam calcium/proton exchanger 61 427 - -
Rops8g01921 453 NCBIfam calcium/proton exchanger 80 427 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01921 Rops-Chr8 43807554 43811061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01921 8 432 Antiporters AT2G38170 71.628 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01921 K07300 - gmx:100816231 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01921 8 43807554 43811061 Rops8g01921 8 43807554 43811061 ECH
Rops8g01921 8 43807554 43811061 Rops4g00985 4 26695071 26700436 PCT