Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01919 ATGGCAGGTCCAGAGATTGCAACAAATGGGAACACCCCATTGAACTTGAAGCCAAGTGAAACCAAAGGAAAAACCATCACTTGCAAAGCTGCTGTGGCACATGGTCCTGGGGAACCCTTTGTGGTGGAACAAATTCTTGTTCATCCTCCTCAAAAAATGGAGGTTCGAATCAAGATCCTTTATACTTCGATTTGTCACACCGATCTAAGTGCTTGGCAAGGAGAGAATGAGGCTCAGCGTGCTTATCCTAGGATTTTTGGTCATGAAGCTTCTGGGGTTGTGGAGAGTGTTGGTGAAGGTGTGAATGACATGAAAGAAGGGGACATAGTTGTACCTATATTCAATGGTGAGTGTGGTGAGTGCAAATACTGCAAGTGTGAGCAAACCAACATGTGTGAGAGATTTGGTGTGAACCCCATGAAGAAAGTGATGGTTAGTGATGGCACAAGTAGGTTCTCCACCATTGATGGCAAACCCATCTTCCATTTCTTGAACACTTCAACCTTCACTGAGTACACGGTTTTGGACTCAGCTTGTGTTGTCAAGCTCCACCATGAAAACACCCTCAGCCTCAAAAACCTCACCTTGCTCAGCTGCGGAGTCTCCACAGGAATTGGAGCTGCTTGGAATACTGCTAATGTGCATGCTGGTTCATCTGTAGCAGTCTTTGGTTTAGGTGCTGTTGGGCTTGCTGTTGCTGAAGGGGCAAGAGCCAGAGGTGCATCCAAAATAATAGGCGTAGACATCAACCCAGACAAATTCATCAGAGCCCGAGAAATGGGAATCACAGACTTCATAAATCCAAGGGATGAAGAGAAGCCGGTTTATGAGAGAATCAGAGAAATGACTGGAGGAGGTGTACACTACAGTTTTGAATGTACAGGAAACTTGAGCGTTCTAAGGAATGCCTTCTTGTCTGCTCATGAGGGTTGGGGATTGGCTGTAATATTGGGAATTCATTCATCACCAAAGTTGCTTCCCATCCACCCAATGGAGCTCTTCGATGGTCGCAGGATTGTAGGGTCAGTCTTTGGAGGTTTCAAAGGGAAAACTCAATTACCTCATCTTGCCACAGAATGCCTACATAGAGCAGTGAAGCTGGATAATTTCATCACTCACGAGCTTTCATTTGAGGAGATAAACAAAGCCTTCGATCTTTTGGTCACTGGGAAGTCACTGAGATGTCTTCTGCATTTCTGA 1200 0.4542 MAGPEIATNGNTPLNLKPSETKGKTITCKAAVAHGPGEPFVVEQILVHPPQKMEVRIKILYTSICHTDLSAWQGENEAQRAYPRIFGHEASGVVESVGEGVNDMKEGDIVVPIFNGECGECKYCKCEQTNMCERFGVNPMKKVMVSDGTSRFSTIDGKPIFHFLNTSTFTEYTVLDSACVVKLHHENTLSLKNLTLLSCGVSTGIGAAWNTANVHAGSSVAVFGLGAVGLAVAEGARARGASKIIGVDINPDKFIRAREMGITDFINPRDEEKPVYERIREMTGGGVHYSFECTGNLSVLRNAFLSAHEGWGLAVILGIHSSPKLLPIHPMELFDGRRIVGSVFGGFKGKTQLPHLATECLHRAVKLDNFITHELSFEEINKAFDLLVTGKSLRCLLHF* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01919 399 FunFam Alcohol dehydrogenase 6 31 216 - -
Rops8g01919 399 MobiDBLite consensus disorder prediction 1 20 - -
Rops8g01919 399 Pfam Alcohol dehydrogenase GroES-like domain 54 148 IPR013154 -
Rops8g01919 399 PANTHER ALCOHOL DEHYDROGENASE 23 396 - -
Rops8g01919 399 Gene3D - 204 342 - -
Rops8g01919 399 Gene3D - 31 394 - -
Rops8g01919 399 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 87 101 IPR002328 GO:0008270|GO:0016491
Rops8g01919 399 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 189 358 IPR036291 -
Rops8g01919 399 FunFam S-(hydroxymethyl)glutathione dehydrogenase 204 342 - -
Rops8g01919 399 SUPERFAMILY GroES-like 21 223 IPR011032 -
Rops8g01919 399 Pfam Zinc-binding dehydrogenase 227 347 IPR013149 -
Rops8g01919 399 SUPERFAMILY GroES-like 349 399 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01919 Rops-Chr8 43780262 43789696 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01919 54 341 Monolignol Biosynthesis Gene Families AT4G39330 26.948 1.13e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01919 K00001 - gmx:100787307 637.106