Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01916 ATGGGGTTTGGGCTGAAAAGAAGGAAGAAGAAAGAAGAAGGAAGAGGAGAGATGCGCAAGTCTTTCAAGGATTCTCTCAAAGCTCTTGAAGCTGACATTCAATTTGCCAATACATTAGCTTCTGAGTATCCAAGTGATCATGATGGTGCCTGCCTCCAAATGAGATTGTCCTACAGTCCAGTTGCTCAGTTTTTCCTTTTTCTAGTTAAATGGACTGATTGTCACCTTGCTGGAGCCTTAGGATTGCTAAGAATTCTTATATTCAAGGCATATGAGGATGGAAAGACAACCATGTCTATTTATGAAAGAAAAGCCAGTCTGAAGGAGTTTTATGGTGTGGTCTTTCCCTCTTTATTGCAACTTCACAGAGGAATCACTGATGTTGAAGACAGGAAACAAAAACATCTATTTGCTACTAGGTACAGGCCTAAAGAGCCTAAAGATAAAGGAAGCAAAAGAAAGCTCTCTGAAATTGAGATAGAGAGAGATGAAGAGTGTGGTATTTGCATGGAGATGAACAGCAAGGTTGTGTTGCCCAATTGCAATCATTCAATGTGTATGAAATGCTACCGAGACTGGCATGCAAGATCTCAATCTTGCCCTTTCTGTCGGGACTGTCTTAAGAGAGTAAACTCTGGTGACCTTTGGATCTACATGAGCAGTAGTGAGAGAGAAGACTTGGCTTCAATCAACAAGGAGAATTTGAAAAGACTATTTGTGTACATAGAAAAGTTGCCTCTTGTTCCAAGACCCTATATTCATGTCATATCTTCACAATTGGCGATTGCCACCTAG 795 0.4063 MGFGLKRRKKKEEGRGEMRKSFKDSLKALEADIQFANTLASEYPSDHDGACLQMRLSYSPVAQFFLFLVKWTDCHLAGALGLLRILIFKAYEDGKTTMSIYERKASLKEFYGVVFPSLLQLHRGITDVEDRKQKHLFATRYRPKEPKDKGSKRKLSEIEIERDEECGICMEMNSKVVLPNCNHSMCMKCYRDWHARSQSCPFCRDCLKRVNSGDLWIYMSSSEREDLASINKENLKRLFVYIEKLPLVPRPYIHVISSQLAIAT* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01916 264 FunFam RING/U-box superfamily protein 147 213 - -
Rops8g01916 264 SUPERFAMILY RING/U-box 152 208 - -
Rops8g01916 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 213 IPR013083 -
Rops8g01916 264 ProSiteProfiles Zinc finger RING-type profile. 166 204 IPR001841 -
Rops8g01916 264 Pfam Zinc finger, C3HC4 type (RING finger) 163 208 - -
Rops8g01916 264 PANTHER RING FINGER PROTEIN 41, 151 20 248 - -
Rops8g01916 264 ProSitePatterns Zinc finger RING-type signature. 181 190 IPR017907 -
Rops8g01916 264 SMART ring_2 166 203 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01916 Rops-Chr8 43700721 43703979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01916 107 208 C3H Transcription Factor Family AT5G01960 29.524 4.70e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01916 K25840 - gmx:100814293 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01916 8 43700721 43703979 Rops8g01916 8 43700721 43703979 ECH