Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01915 ATGATCGTTGGATTCAATTCCAATGATCACACAAGTTCCTCTGCTTCTTCCTTCTTTGTAAGTCTTGTTACGGGAACTTGGACGATGACAAAGGGCAAGGGAGCAGGAAGGAATCCAAAGGAAGTATTGAAAGTTGTTGATGACCGTAAGGTAGGAAAGCGAAAGGCTGCTTATAAACCTGACAAGGGCAGTGCTCAAAAGTCAAAGAAGGTGAAGAAGGCCAAGAAAGATCCCAACAAACCAAAAAGACCTCCCAGTGCTTTCTTTGTGTTCCTTGAGGAGTTCAGAAAGACTTTTAAGGCAGAAAATCCTAATGTGAAGGCTGTATCAGCTGTTGGGAAGGCTGGAGGAGCGAAATGGAAATCCCTGACTGATGCTGAGAAAGCTCCATATGAAGCCAAGGCTGCAAAAAGGAAAGTCGAGTATGAAAAACTTATGAATGCTTATAGCAAGAAGGCAAGTTCAGCAGATGATGGAGATGAGGAATCAGACAAGTCCAAATCTGAAGTGAATGATGAAGATGATGAAGCCAGTGGAGAGGAGGACCACCAAGAGGAGGAGGAGGATGACGAGGGAGAGGAAGAGGACGAGGAAGATGATGACTGA 606 0.4472 MIVGFNSNDHTSSSASSFFVSLVTGTWTMTKGKGAGRNPKEVLKVVDDRKVGKRKAAYKPDKGSAQKSKKVKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPNVKAVSAVGKAGGAKWKSLTDAEKAPYEAKAAKRKVEYEKLMNAYSKKASSADDGDEESDKSKSEVNDEDDEASGEEDHQEEEEDDEGEEEDEEDDD* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01915 201 MobiDBLite consensus disorder prediction 173 201 - -
Rops8g01915 201 CDD HMG-box_AtHMGB1-like 82 142 - -
Rops8g01915 201 PRINTS High mobility group (HMG1/HMG2) protein signature 43 63 - -
Rops8g01915 201 PRINTS High mobility group (HMG1/HMG2) protein signature 115 134 - -
Rops8g01915 201 PRINTS High mobility group (HMG1/HMG2) protein signature 134 154 - -
Rops8g01915 201 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 31 184 IPR031061 -
Rops8g01915 201 MobiDBLite consensus disorder prediction 113 134 - -
Rops8g01915 201 Pfam HMG (high mobility group) box 81 150 IPR009071 -
Rops8g01915 201 SMART hmgende2 80 151 IPR009071 -
Rops8g01915 201 SUPERFAMILY HMG-box 66 151 IPR036910 -
Rops8g01915 201 MobiDBLite consensus disorder prediction 37 67 - -
Rops8g01915 201 Gene3D High mobility group box domain 63 164 IPR036910 -
Rops8g01915 201 MobiDBLite consensus disorder prediction 149 201 - -
Rops8g01915 201 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 81 150 IPR009071 -
Rops8g01915 201 MobiDBLite consensus disorder prediction 29 85 - -
Rops8g01915 201 MobiDBLite consensus disorder prediction 154 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01915 Rops-Chr8 43695346 43698491 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Rops8g01915 HMG_box 2.3e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01915 K25507 - nnu:104595013 169.859