Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01911 ATGGTCATGACCATGATTGGCAATTGCTTTGGTGCGTTGAATTGTTGGAAAGGGAGGGATGATCCTGCTGATCAGTCTCAGGAACAAGTGTTTGCAACTAAAAACTTTAGCTATAACTCATTGAGATCAGCAACTGGAGATTTTCATCCTTCATGCAGACTTGGTGGAGGAGGTTATGGAGTTGTCTACAAGGGAGTTTTAAGGGATGGTACTGAAGCTGCTATCAAGTCTCTTTCTGTAGAGTCTAAACAAGGAACCCATGAATTTATGACAGAAATTGATATGATAGCAAATATACAACATCCAAATCTTGTGAAACTAATTGGCTGCTGTGTTGAGGGTAGTCATCGAATATTGGTGTACGAATTTCTGAAGAACAATAGCCTTGGGAGTTCTTTGCTTGGTTCAAAAAGTAAATATGTTGCTCTGGATTGGCCAAAGAGGGCGGCTATTTGCCGTGGTACAGCTTCTGGTCTTAGCTTTCTTCATGAAGAGGCTCAGCCAAACATTGTTCACAGAGATATCAAGGCCGGCAACATATTGCTGGATGAGAACTTTAATCCAAAAATTGGGGATTTTGGTCTTGCAAAACTTTTTCCTGACAATGTCACCCATGTTAGTACTCGAGTTGCAGGAACTGTGGGATATCTTGCACCAGAATATGCACTTCTAGGACAGCTGACAAAGAAGGCAGATGTTTATAGTTTTGGGATTCTCATGCTTGAAATAATCAGCGGGCAAAGTAGTAGTAAAGCTGCATTTGGAGATAATATTTTGGTTCTGGTGGAATGGGTTTGGAAGCTGAAAGAAGAAAATAGGCTTCTGGAGATTGTTGATTCAGAACTAACTGAATATGATGAGAATGAGGTGTATCGGTTCCTTGTGGTTGCTCTATTTTGTACGCAATCAGCAGCTCAGCATAGACCCACCATGAAGCAAGTATTGGAAATGCTTTCCAAGGAAGTTCATCTTAATGAGAAGGCATTAACTGAGCCTGGAATATACAGATGGCATACCCCTGGAAATATGGGTGGTTCTTCGAATGAGACATCATCTTCTCAAGTAATCAAGTACAAAAAATCTGAAAATCCACATGAACCCTATAGTGGTACAGATATTGTGACAGAGATGTTTCCTAGATGA 1143 0.4059 MVMTMIGNCFGALNCWKGRDDPADQSQEQVFATKNFSYNSLRSATGDFHPSCRLGGGGYGVVYKGVLRDGTEAAIKSLSVESKQGTHEFMTEIDMIANIQHPNLVKLIGCCVEGSHRILVYEFLKNNSLGSSLLGSKSKYVALDWPKRAAICRGTASGLSFLHEEAQPNIVHRDIKAGNILLDENFNPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGILMLEIISGQSSSKAAFGDNILVLVEWVWKLKEENRLLEIVDSELTEYDENEVYRFLVVALFCTQSAAQHRPTMKQVLEMLSKEVHLNEKALTEPGIYRWHTPGNMGGSSNETSSSQVIKYKKSENPHEPYSGTDIVTEMFPR* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01911 380 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 33 347 - -
Rops8g01911 380 Pfam Protein tyrosine and serine/threonine kinase 53 318 IPR001245 GO:0004672|GO:0006468
Rops8g01911 380 CDD STKc_IRAK 67 320 - -
Rops8g01911 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Rops8g01911 380 Coils Coil 268 288 - -
Rops8g01911 380 Gene3D Transferase(Phosphotransferase) domain 1 124 332 - -
Rops8g01911 380 FunFam Putative LRR receptor-like serine/threonine-protein kinase 124 330 - -
Rops8g01911 380 MobiDBLite consensus disorder prediction 360 380 - -
Rops8g01911 380 ProSiteProfiles Protein kinase domain profile. 48 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01911 380 SUPERFAMILY Protein kinase-like (PK-like) 28 318 IPR011009 -
Rops8g01911 380 Gene3D Phosphorylase Kinase; domain 1 15 123 - -
Rops8g01911 380 SMART serkin_6 48 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01911 380 FunFam serine/threonine-protein kinase PBS1-like 16 123 - -
Rops8g01911 380 ProSitePatterns Protein kinases ATP-binding region signature. 54 76 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01911 Rops-Chr8 43626818 43632743 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01911 36 333 Receptor kinase-like Gene Family AT1G56120 53.020 1.17e-104 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops8g01911 PK_Tyr_Ser-Thr 3.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01911 - - gmx:100816683 632.484