Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01908 ATGAGCAATCCTTGTGTAAACTCCAAGAGAATAGCATTCCAATTCCTTTGTGGGTTTCTTTTATGCATGAGCACATGTAAGGACTCTGCAACTGCAGCAACCCTGCAAGGAAATGAAACTGATCTACACACTTTACTTGACTTGAAGAGTAGGATAGTTCAAGATCGATTTCACAGTATGAGTTTGTGGAATGATTCCATCCACCACTGCAACTGGGCAGGAATCACCTGCAACATCTCCAATGGAAGGGTCATGTATTTGATCCTTGCTAACCTGACACTGGCTGGCACAGTTCCACCATCCATAGGAAATCTTACATTCCTCACCAGACTCAACTTGAGAAATAATAGTTTCCATGGAGAGTTTCCTCAAGAAGTGGGACGTCTACTATACTTGCAACATATAAACATTAGTTACAATCCTTTTGGTGGAAGAATTCCAAGTAATCTAAGTCATTGCACAGAACTAAGTATATTATCTGCTGGTCATAACAACTTCACAGGAACAATTCCAGCATGGATAGGAAACTTTTCTTCTTTATCTCTAGTTAACCTTGCTGTGAACAACTTGTATGGAAGCATACCAAATGAGGTAGGCCAATTATCAAGCTTGACACTTCTTGGACTCAATGGAAATTACTTGTCTGGGACAATTCCTCCTTCAATTTATAATATTTCTACCTTGTACTATTTCACCGTTTCTCAAAATCATCTGCATGGTAACATACCGGCTGATGTTGGTTTTACTCTTCCTAATCTTGGAACATTTGCTGGTGGTGTCAACAATTTCACTGGAACAATTCCTGAATCGCTGTCAAATGCATCAAGACTGGAAATTCTTGACTTTGCTGAAAATGGTCTCACTGGCACACTTCCAAAGAACATAGGAAGATTGTCCCTTTTGAAAAGACTCAATTTTGATGACAACAGACTTGGAACTGGGAAAGCTGGTGACCTGAATTTTCTTGCTTCCTTGATTAATTGTACTGCTCTTGAAGTTTTGGGTCTTTCTGGAAATAGTTTTGGAGGAGAATTGCCGAGCTTAGTTGCTAATCTTTCAACCCAATTGACTACACTTACATTAGGTCGCAATGCAATACATGGAAGTATCCCTATTGGGATTGGGAACCTTGTTAACTTAACCGTTCTGGGATTGGAAATGAACATCCTAAGTGGTTCTGTTCCTGATACAATAGGTCTGCTTCAAAAGTTAAATGATTTAGAATTGAGTGGCAACAACTTTTCTGGGGTAATCCCTTCCTCCATGGGAAACTTGACAAGATTAATAAGGTTATTTATGGAAGAGAACAACTTTGAGGGAAGTATACCAAGAAGTCTTGGAAAATGCCAGAGCTTATTGATGCTAAATTTTAGCCATAACAATCTCAATGGCACCATACCAAGACAAGTAATTGCCTTGTCTTCTCTTTCACTTTACTTGGACTTGTCTAATAATGTTTTGACAGGGTTTGTGCCTCTTGAAGTGGGTAAGTTAGTCAATCTTGGAGAGTTGGACCTCTCAGAGAACAAACTGTCTGGCATGATTCCATCCTCTCTTGGCAGCTGTAATAGTTTGGAATTGCTGCATTTGCAGGGTAACTTTTTTGAGGGAAACATTCCTTCAACTATGCAGAATTTGAGAGGTATACAAGACATAGATCTTTCACGCAATAACTTGTCTGGAAAGATTCCTGAATTTCTTGGTGAGTTCATAGTGCTCAAGCATCTCAATCTCTCTTACAATGATTTTGTGGGAAAGATACCAACAAACGGAATCTTCAAGAATGCAACTTCCTTTTCAATGTATGGAAACAGCAAGCTTTGTGGTGGTGTCCCAGAATTAAATTTACCTGCATGCACCATCAAAAAAGCCTCTTCCTTTAGAAAATTTCTCAAGGTGATTATCCCTCTCGCTAGTGCACTTGTATTTGTACTCTTCCTATCTTGTTTTCTTACAATATTTATGGTAAAAAGATCAAGAAAGATAACCTCAAGAGCAACTACTACAAAGGACTTGGAACTGGTAATTTCTTACTCAGAAATTGCTAAGTGCACTGGCGGGTTCTCTCAGGATAACTTGATTGGCTCCGGAAGTTTTGGTTCTGTGTACAAAGGAACCCTTTCAAGTGATGGATCAATTATTGCAATTAAAGTATTGAATCTTGAACAAGTAGGAGCTTCAAAGAGCTTCATTGACGAATGCCAGGTCCTGAGAAGTATAAGGCACCGCAACCTTCTCAAGATCATAACTGCTATCTCAAGTGTTGATCATCAAGGTAATGACTTCAAAGCTCTGGTGTTCGAGTTCATGTCTAATGGAAGTCTAGAAGATTGGTTGCATCCTATAAATAATATGCATAACCAGGAAAAGACATTGACAATTGTCCAAAGACTGAACATAGCAATTGATGTTGCTTGTGCACTGGAATATCTCCACCACTTCTGTGAAACTCCAATTGTTCATTGTGATATAAAGCCAAGCAATGTACTTCTTGACAATGATATGGTAGCCCATCTTGGTGACTTTGGATTAGCTACATTTTTGTTTGAAGAATCATGTGGTTCCAACCAATCAACTATGTCAGCTAGACTAAAGGGCTCTATTGGGTACATCCCTCCAGAGTATGGAATGGGTGGCCACCCTTCTGCACTGGGAGATGTTTACAGTTATGGGATACTATTACTGGAGATCTTCACAGGAAAAAGACCAACAAATGAGATGTTTGAAGGTGGCATGGGAATTAACCAGTTTACAGCCTTGGCTTTACCAAATGATGCCATGGATATTATTGACCCTTTGTTGCTCTCTGAGCAAGAATTTGATGATCGAAATGAAGAAGCTTCTGAAGAGGAGACAGCAATAAGGAGGGAGCAGGAACCTGAAGCCCTTGCTACAATGGAGAATTGCTTTGTTTCGGTGTTGCAAATTGGAGTGTCATGTTCTGCAACTTCACCAAGTGAACGACTGCCTATGACTCTGGTCGTCAACAAACTGCAGGCAATCAAGAACTCGTATTTAAGACTTGACCAGTTAAAAAGGATTAGATGA 3048 0.3963 MSNPCVNSKRIAFQFLCGFLLCMSTCKDSATAATLQGNETDLHTLLDLKSRIVQDRFHSMSLWNDSIHHCNWAGITCNISNGRVMYLILANLTLAGTVPPSIGNLTFLTRLNLRNNSFHGEFPQEVGRLLYLQHINISYNPFGGRIPSNLSHCTELSILSAGHNNFTGTIPAWIGNFSSLSLVNLAVNNLYGSIPNEVGQLSSLTLLGLNGNYLSGTIPPSIYNISTLYYFTVSQNHLHGNIPADVGFTLPNLGTFAGGVNNFTGTIPESLSNASRLEILDFAENGLTGTLPKNIGRLSLLKRLNFDDNRLGTGKAGDLNFLASLINCTALEVLGLSGNSFGGELPSLVANLSTQLTTLTLGRNAIHGSIPIGIGNLVNLTVLGLEMNILSGSVPDTIGLLQKLNDLELSGNNFSGVIPSSMGNLTRLIRLFMEENNFEGSIPRSLGKCQSLLMLNFSHNNLNGTIPRQVIALSSLSLYLDLSNNVLTGFVPLEVGKLVNLGELDLSENKLSGMIPSSLGSCNSLELLHLQGNFFEGNIPSTMQNLRGIQDIDLSRNNLSGKIPEFLGEFIVLKHLNLSYNDFVGKIPTNGIFKNATSFSMYGNSKLCGGVPELNLPACTIKKASSFRKFLKVIIPLASALVFVLFLSCFLTIFMVKRSRKITSRATTTKDLELVISYSEIAKCTGGFSQDNLIGSGSFGSVYKGTLSSDGSIIAIKVLNLEQVGASKSFIDECQVLRSIRHRNLLKIITAISSVDHQGNDFKALVFEFMSNGSLEDWLHPINNMHNQEKTLTIVQRLNIAIDVACALEYLHHFCETPIVHCDIKPSNVLLDNDMVAHLGDFGLATFLFEESCGSNQSTMSARLKGSIGYIPPEYGMGGHPSALGDVYSYGILLLEIFTGKRPTNEMFEGGMGINQFTALALPNDAMDIIDPLLLSEQEFDDRNEEASEEETAIRREQEPEALATMENCFVSVLQIGVSCSATSPSERLPMTLVVNKLQAIKNSYLRLDQLKRIR* 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01908 1015 Gene3D Ribonuclease Inhibitor 40 152 IPR032675 -
Rops8g01908 1015 SUPERFAMILY RNI-like 207 587 - -
Rops8g01908 1015 Gene3D Phosphorylase Kinase; domain 1 669 769 - -
Rops8g01908 1015 Pfam Leucine Rich Repeat 132 153 IPR001611 GO:0005515
Rops8g01908 1015 SMART serkin_6 688 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01908 1015 Pfam Leucine rich repeat N-terminal domain 39 78 IPR013210 -
Rops8g01908 1015 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 219 315 - -
Rops8g01908 1015 Gene3D Ribonuclease Inhibitor 153 248 IPR032675 -
Rops8g01908 1015 Pfam Protein kinase domain 689 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01908 1015 ProSiteProfiles Protein kinase domain profile. 688 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01908 1015 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 38 192 - -
Rops8g01908 1015 FunFam LRR receptor-like serine/threonine-protein kinase EFR 659 769 - -
Rops8g01908 1015 Gene3D Ribonuclease Inhibitor 249 320 IPR032675 -
Rops8g01908 1015 SMART LRR_typ_2 425 449 IPR003591 -
Rops8g01908 1015 SMART LRR_typ_2 401 424 IPR003591 -
Rops8g01908 1015 SMART LRR_typ_2 498 522 IPR003591 -
Rops8g01908 1015 SMART LRR_typ_2 201 225 IPR003591 -
Rops8g01908 1015 SMART LRR_typ_2 105 129 IPR003591 -
Rops8g01908 1015 FunFam LRR receptor-like serine/threonine-protein kinase EFR 317 625 - -
Rops8g01908 1015 SUPERFAMILY L domain-like 39 311 - -
Rops8g01908 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672|GO:0006468
Rops8g01908 1015 Gene3D Transferase(Phosphotransferase) domain 1 770 1012 - -
Rops8g01908 1015 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 770 1010 - -
Rops8g01908 1015 SUPERFAMILY Protein kinase-like (PK-like) 672 998 IPR011009 -
Rops8g01908 1015 ProSitePatterns Protein kinases ATP-binding region signature. 694 717 IPR017441 GO:0005524
Rops8g01908 1015 PANTHER OS04G0122200 PROTEIN 199 1005 - -
Rops8g01908 1015 Gene3D Ribonuclease Inhibitor 321 621 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01908 Rops-Chr8 43587887 43591018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01908 38 1007 Receptor kinase-like Gene Family AT3G47570 44.588 0.0 806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Rops8g01908 Pkinase 1.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01908 - - gmx:100785230 1613.2