Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops8g01900 | ATGTTCCTATTTCCCATGTTTCAGTCCATGAAGCTGCTACCCTTTTGGCTGCTTCTTATAATGTGCTTTTGTGCATTCATAATGACCTCTTCTTCTTATGTTCTTGGTTCTTCCTCAACTGTTTTGTCTTCTTCAGCCACATTACAAAGCAAAGAAGCAAGTGCTTTGTTGATGTGGAAAGCCAGCCTTGACAACCAAATCCAGGCTCTGCTATCTTCATGGACTGGCAATAGTTCATGCAATTGGCTGGGAATTACTTGTGGCGAGTCCAGGTTGGTCTCCAACATAAATCTTACAAATATGGGATTAAGAGGTACGCTTGAAAGTCTCAACTTCTCATTACTTCCAAACATCCTCACTCTAAATATGAGTCACAACTCCTTGAATGGAAGTATTCCTCCCCACATTGGAATACTGTCCAAACTCTCACATCTTGATCTCAGTGCCAATCATCTCTCTGGAATAATTCCATCTGAAATAACACAATTGGTTGGTCTTCATATTTTAGATTTGGCTAATAACGTTTTCAGTGGTTCTATTCCTCAAGAAATAGGCGCATTCAGGAATCTGAGAGAGCTTAGTCTTCAACGTGCCAATCTCACAGGAACTATTCCAATTTCTATGGGGAACCTGGCCTTCTTATCACATTTAGATATAGGAGGTAACAACCTTTACGGCAACTTCCCAAATGAGATTTGGAATTTGCGCAACTTAAAGTATTTAGGGGTTGAAATAAATAAGTTTAATGGTTCTATAACTCCCCAGAAAATTGTGAAGTTGCATAAATTACAGACTCTAGATCTTGGCGACAGTGGTCTTTCCGCCATGGGTCCCATCCTCGAAGAAATATGGAAGTTGGAAAATTTAACATATCTTTCTCTTCCCCATTGTAATCTCACAGGGCCTATCCCAATTTCTATAGGAAAGTTGGTCAACTTATCATATCTAAATTTAATAGGCAACCATATTTCTGGCCACATTCCTAAAGAAATTGTGAAGTTGCAAAACCTAGAGTATCTATTTCTTTTTGAGAACAACTTATCTGGCCATATTCCTATTGAAATCGGGGAGTTGCTCAACCTAAAGGAGTTACAACTTAATGACAATGATATTTCTGCTTCCATTCCTTGGGAAATTGGGAAGTTTGTCAACATGAGGATTTTACGGCTTCACAACAATAATCTTTCTGGTTCCATTCCATGGGAAATTGGGAAGATGGTCAACATGGGGGTTTTATGGCTTCAAAACAACAATCTCTCTGGTTCTATTCCTATGGAGATGGGAATGATGACTTCCTTGTTTGAACTTGATTTGTCCGGTAACTCTCTCTCTGGTAGAATCCCATCTACTATGGGAAACTTAAGCAATTTACATTTTCTTTACCTTTATAGCAACCATCTCACGGGTCCCATTCCTAATGAACTTGGAAAGCTCTATTCTCTTGTCACAATCCAATTATTAGATAACAATCTTTCTGGGGCAATCCCACCTTCCATAGGTAACTTGGTCAATTTGGAATCCATTATGCTTCATGAAAATAAACTCTCCGGACCAATTCCTTCCACTATTGGAAATTTGACAAAGGACAGTATATTATCTTTATACTCAAATGAACTCATTAGACCAATTCCTTCCACTATTGGAAATTTGACAAAGATCAAAGAGTTAAGTTTATTCTCAAATGAACTCAGTGGAAACATTCCGATCGAAATGAATAGGCTTATAAATTTGGAAAAATTGCAACTTTCAGATAATTATTTCATAGGAAGAATTCCACAAGACCTGGGAAACTTGACTTTGTTGATTAAACTCTTGTTGAGCGACAATCATCTTTCAGGAAATGTTCCTCTACAAATAGCATCATTACATGAACTAGATACCTTAGAGCTTGCATCAAATAATTTAAGCGGCTTCATCACAAAACAACTTGGGGGGTTGCCTAAGTTATTGAACTTGAATTTGAGCCAAAACAATTTCAAGGGAAATATTCCTATTGAGTTTGGCCAATTCGAAGTTCTTCAAAGTCTTGATCTTAGTGGAAATTTCTTGGGTGGAACAATACCATCAATGCTTGGACAATTGAAATACTTAATAACATTGAATCTCTCACATAATAATCTTTTTGGTGTCATTCCCTCTAGCTTTGATCAGATGTTTGGCCTGGCATTTGTTGATATATCATACAACCAATTAGAGGGTCCACTTCCAAATATTCCAGCCTTCCATAACATTACAATTGAAGCACTGAGAAATAATAAAGGCTTATGTGGTAATATCTCAAGCTTGGAGCCTTGCCCAACATCAAGTGGCGAATCTCATAATCATAAGCCTAACAAACTCTTATTGATGGTCTTTCCTATTACAGTGGGCACTCTGATACTGGCATTACTTTCTTACGGTGTCTCATATTATCTCTGTCAAACATCAACCATAAAAGAATCTCAAGTTGGAGAATCACAAGCTCAGAATCTATTTGCAATATGGAGTTTTGATGGAAAAATGGTATATGATAACATTGTTGAAGCCACAGAAGAGTTTGACAACAAATATCTCATTGGGGTTGGAGGGCAAGGAAGTGTTTACAAAGCAGTGTTGCCCACAGGTCAAGTTGTTGCTGTGAAGAAACTCTATTCAGTTCCCAATGGAGAAATGTCCAATCTAAAAGCTTTCACAAATATATCAAGCAAGAATGTTCTTTTGGATTTGGAATATGTGGCTCATGTCTCTGACTTTGGAACTGCTAAGCTTCTTAATCCCAATTCATCCAACTTGACCTCATTTGCAGGCACCTTTGGATATGTTGCTCCAGAACTTGCATACACAATGGAAGTAAATGGGAAATGTGATGTGTATAGTTTTGGGGTATTAGCGCTAGAAGTACTTTTTGGAATGCACCCTGGAGATGTTATAACTTCTCCCTTGCTACCATCTTCATGGACTATTGTGGGCTCGACACTTGATAGCATGCCATTGATGGATAACATGGACCAACGTCTCCCTCGTCCTATAGATCCTATTGTTAAGGAGTTGGTATCGATTGCAGGGATAGCAATTGATTGCTTGACTGAAAGCCCACGTTCTCGTCCTACAATGGAGCAAGTTGCCAAGGAACTTGTAATGTCATAG | 3126 | 0.3829 | MFLFPMFQSMKLLPFWLLLIMCFCAFIMTSSSYVLGSSSTVLSSSATLQSKEASALLMWKASLDNQIQALLSSWTGNSSCNWLGITCGESRLVSNINLTNMGLRGTLESLNFSLLPNILTLNMSHNSLNGSIPPHIGILSKLSHLDLSANHLSGIIPSEITQLVGLHILDLANNVFSGSIPQEIGAFRNLRELSLQRANLTGTIPISMGNLAFLSHLDIGGNNLYGNFPNEIWNLRNLKYLGVEINKFNGSITPQKIVKLHKLQTLDLGDSGLSAMGPILEEIWKLENLTYLSLPHCNLTGPIPISIGKLVNLSYLNLIGNHISGHIPKEIVKLQNLEYLFLFENNLSGHIPIEIGELLNLKELQLNDNDISASIPWEIGKFVNMRILRLHNNNLSGSIPWEIGKMVNMGVLWLQNNNLSGSIPMEMGMMTSLFELDLSGNSLSGRIPSTMGNLSNLHFLYLYSNHLTGPIPNELGKLYSLVTIQLLDNNLSGAIPPSIGNLVNLESIMLHENKLSGPIPSTIGNLTKDSILSLYSNELIRPIPSTIGNLTKIKELSLFSNELSGNIPIEMNRLINLEKLQLSDNYFIGRIPQDLGNLTLLIKLLLSDNHLSGNVPLQIASLHELDTLELASNNLSGFITKQLGGLPKLLNLNLSQNNFKGNIPIEFGQFEVLQSLDLSGNFLGGTIPSMLGQLKYLITLNLSHNNLFGVIPSSFDQMFGLAFVDISYNQLEGPLPNIPAFHNITIEALRNNKGLCGNISSLEPCPTSSGESHNHKPNKLLLMVFPITVGTLILALLSYGVSYYLCQTSTIKESQVGESQAQNLFAIWSFDGKMVYDNIVEATEEFDNKYLIGVGGQGSVYKAVLPTGQVVAVKKLYSVPNGEMSNLKAFTNISSKNVLLDLEYVAHVSDFGTAKLLNPNSSNLTSFAGTFGYVAPELAYTMEVNGKCDVYSFGVLALEVLFGMHPGDVITSPLLPSSWTIVGSTLDSMPLMDNMDQRLPRPIDPIVKELVSIAGIAIDCLTESPRSRPTMEQVAKELVMS* | 1042 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops8g01900 | 1041 | SUPERFAMILY | L domain-like | 51 | 325 | - | - | |
| Rops8g01900 | 1041 | FunFam | Leucine-rich repeat receptor-like protein kinase TDR | 453 | 767 | - | - | |
| Rops8g01900 | 1041 | Gene3D | Ribonuclease Inhibitor | 375 | 483 | IPR032675 | - | |
| Rops8g01900 | 1041 | Pfam | Protein kinase domain | 895 | 1037 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Rops8g01900 | 1041 | Gene3D | Ribonuclease Inhibitor | 274 | 374 | IPR032675 | - | |
| Rops8g01900 | 1041 | PANTHER | LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED | 28 | 149 | - | - | |
| Rops8g01900 | 1041 | FunFam | Receptor-like protein kinase 7 | 208 | 452 | - | - | |
| Rops8g01900 | 1041 | FunFam | Nuclear pore complex protein NUP107 | 49 | 206 | - | - | |
| Rops8g01900 | 1041 | Gene3D | Ribonuclease Inhibitor | 484 | 774 | IPR032675 | - | |
| Rops8g01900 | 1041 | SUPERFAMILY | L domain-like | 256 | 520 | - | - | |
| Rops8g01900 | 1041 | SMART | LRR_typ_2 | 430 | 453 | IPR003591 | - | |
| Rops8g01900 | 1041 | SMART | LRR_typ_2 | 310 | 334 | IPR003591 | - | |
| Rops8g01900 | 1041 | SMART | LRR_typ_2 | 163 | 187 | IPR003591 | - | |
| Rops8g01900 | 1041 | SMART | LRR_typ_2 | 694 | 717 | IPR003591 | - | |
| Rops8g01900 | 1041 | SMART | LRR_typ_2 | 358 | 382 | IPR003591 | - | |
| Rops8g01900 | 1041 | SMART | LRR_typ_2 | 139 | 162 | IPR003591 | - | |
| Rops8g01900 | 1041 | SMART | LRR_typ_2 | 646 | 670 | IPR003591 | - | |
| Rops8g01900 | 1041 | SMART | LRR_typ_2 | 211 | 235 | IPR003591 | - | |
| Rops8g01900 | 1041 | SMART | LRR_typ_2 | 260 | 283 | IPR003591 | - | |
| Rops8g01900 | 1041 | SMART | LRR_typ_2 | 502 | 526 | IPR003591 | - | |
| Rops8g01900 | 1041 | SMART | LRR_typ_2 | 454 | 478 | IPR003591 | - | |
| Rops8g01900 | 1041 | SMART | LRR_typ_2 | 574 | 598 | IPR003591 | - | |
| Rops8g01900 | 1041 | Pfam | Leucine rich repeat N-terminal domain | 51 | 87 | IPR013210 | - | |
| Rops8g01900 | 1041 | Gene3D | Transferase(Phosphotransferase) domain 1 | 887 | 1041 | - | - | |
| Rops8g01900 | 1041 | ProSiteProfiles | Protein kinase domain profile. | 697 | 1040 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Rops8g01900 | 1041 | SUPERFAMILY | L domain-like | 423 | 756 | - | - | |
| Rops8g01900 | 1041 | SUPERFAMILY | Protein kinase-like (PK-like) | 835 | 1038 | IPR011009 | - | |
| Rops8g01900 | 1041 | Gene3D | Ribonuclease Inhibitor | 49 | 273 | IPR032675 | - | |
| Rops8g01900 | 1041 | Pfam | Leucine rich repeat | 673 | 731 | IPR001611 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops8g01900 | Rops-Chr8 | 43282931 | 43299970 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops8g01900 | 892 | 936 | Receptor kinase-like Gene Family | AT4G08850 | 64.444 | 2.12e-10 | 63.2 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_LRR-XI-1 | Rops8g01900 | Pkinase | 6.6e-14 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops8g01900 | - | - | gmx:100808316 | 830.091 |