Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01889 ATGTTCCTATTTCCCATGCTTCAGTCCAAGAAGCTGCTACCCTTTTGGCTGCTTCTTATAATGTGCTTTTGTGCATTCATAATGACCTCTTCTTCTCATGTTGTTGGTTCTTCCTCAACTGTTTTGTCTTCTTCAGCCACATTACAAAGCAGAGAAGCAAGTGCTTTGTTGATGTGGAAAGCCAGCCTTGACAACGAAAGCCAAGCTCTGCTATCTTCATGGACTGGTGATAGTTCATGCACTTGGCTGGGAATTACATGTGACGAGTCCAGGTTTGTCTCCAACATAAATCTTACAAATATGGGATTAAGAGGTACGCTTGAAAGTCTCAACTTCTCATCACTTCCAAACATTCTCACTCTAAATATGAGTCACAACTCCTTAAATGGAAGTATTCCTCCCCACATTGGGATGTTGTCCAAACTCTCCCATCTTGATCTCAGTGACAATAATCTGTCTGGAATAATTCCATCTGAAATAACACAGTTGGCCGGTCTTCATACTTTAGATTTGTCTTTTAATGTTTTTGGTGGTTCCATTCCTCATAAGATAGGTGCATTAAGGAATCTGAGAGAGCTCAATATTCTATATACCAATCTCACAGGGACTATTCCAATTTCAATTGGGAACTTGGCTTTCTTGTCACATTTACATTTACGTGGCAACAACCTTTCTGGCAACATTCCAAATGAAATTTGGAATTTACACAACTTAATGTTTTTAGGGGTTGAAGTAAATAACTTAAGTGGTTCTATAATTCCACAAGAAATTGTGAAGTTGCATAAGCTAGAGCATCTAGATCTTGGCGACAGTGGTCTTTCTGCCACTGGTCCCATCCTTGAAGAACTCTGGAAGTTGGGAAATTTAACATTTTTTTCTCTTCCACATTGCAATCTCACAGAGCCTATCCCAATTTCTGTAGGAAAGTTGGTAAACTTGTCATATTTAAATTTAGGAGGCAATCGAATTTCTGGCCACATTCCTAAAGAAATTGGGAAGTTACAGAACTTAGAGCATCTAAGTCTTTGGGAGAACAACTTCTTTGGCCACATTCCTGTGGAAATTGGGAAGTTGGTCAACATGAAGGCTTTAATTCTTGAAAGCAGTAATCTATCGGGTTCCATTCCTCGAGAAATTGGAATGATGACATCTATGTCGGAACTCGATTTGTCTGGTAACTATCTCTCTGGTACAATCCCCTCCACAATCGGAAACTTAAGCAACTTAAATTATCTTTATCTTTATTCCAACCATCTCACTGGTCACATTCCTAATGAAGTTGGAAACCTCTATTCTCTTGTTGCAATCCAGTTGTCAGATAACAATCTTTTTGGGCCAATCCCACCTTCAATAGAACTTGCATACACAATGGAAGTAAATGAGAAATGTGATGTGTATAGTTTTGGGGTATTAGCGCTGGAAGTACTTTTTGGAAAGCACCCTGGAGATGTTATAACTTCTTCCTTGCTACCATCTTCATGGACTATTGTGGGCTCGACACTTGATACCATGCCATTGATGGATAACATGGACCAACGTCTCCACCGTCCTAAAGATCCTATTGTTAAGGAGTTGGTATCGATTGCAAGGATAGCAATTGATTGCTTGACTGAAAGCCCACGTTCTCGTCCTACAATGGAGCAGGTTGCCAAGGAACTTGTAATGTCATAG 1671 0.398 MFLFPMLQSKKLLPFWLLLIMCFCAFIMTSSSHVVGSSSTVLSSSATLQSREASALLMWKASLDNESQALLSSWTGDSSCTWLGITCDESRFVSNINLTNMGLRGTLESLNFSSLPNILTLNMSHNSLNGSIPPHIGMLSKLSHLDLSDNNLSGIIPSEITQLAGLHTLDLSFNVFGGSIPHKIGALRNLRELNILYTNLTGTIPISIGNLAFLSHLHLRGNNLSGNIPNEIWNLHNLMFLGVEVNNLSGSIIPQEIVKLHKLEHLDLGDSGLSATGPILEELWKLGNLTFFSLPHCNLTEPIPISVGKLVNLSYLNLGGNRISGHIPKEIGKLQNLEHLSLWENNFFGHIPVEIGKLVNMKALILESSNLSGSIPREIGMMTSMSELDLSGNYLSGTIPSTIGNLSNLNYLYLYSNHLTGHIPNEVGNLYSLVAIQLSDNNLFGPIPPSIELAYTMEVNEKCDVYSFGVLALEVLFGKHPGDVITSSLLPSSWTIVGSTLDTMPLMDNMDQRLHRPKDPIVKELVSIARIAIDCLTESPRSRPTMEQVAKELVMS* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01889 556 Pfam Leucine rich repeat N-terminal domain 51 88 IPR013210 -
Rops8g01889 556 ProSiteProfiles Leucine-rich repeat profile. 141 162 IPR001611 GO:0005515
Rops8g01889 556 Gene3D Ribonuclease Inhibitor 198 253 IPR032675 -
Rops8g01889 556 SUPERFAMILY Protein kinase-like (PK-like) 452 553 IPR011009 -
Rops8g01889 556 FunFam Nuclear pore complex protein NUP107 49 206 - -
Rops8g01889 556 Gene3D Ribonuclease Inhibitor 350 446 IPR032675 -
Rops8g01889 556 Gene3D Ribonuclease Inhibitor 254 349 IPR032675 -
Rops8g01889 556 SUPERFAMILY L domain-like 80 352 - -
Rops8g01889 556 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 452 554 - -
Rops8g01889 556 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 253 461 - -
Rops8g01889 556 SUPERFAMILY L domain-like 345 453 - -
Rops8g01889 556 PRINTS Leucine-rich repeat signature 142 155 - -
Rops8g01889 556 PRINTS Leucine-rich repeat signature 382 395 - -
Rops8g01889 556 Gene3D Transferase(Phosphotransferase) domain 1 447 556 - -
Rops8g01889 556 SMART LRR_typ_2 211 235 IPR003591 -
Rops8g01889 556 SMART LRR_typ_2 310 333 IPR003591 -
Rops8g01889 556 SMART LRR_typ_2 139 162 IPR003591 -
Rops8g01889 556 SMART LRR_typ_2 406 430 IPR003591 -
Rops8g01889 556 SMART LRR_typ_2 334 358 IPR003591 -
Rops8g01889 556 SMART LRR_typ_2 382 405 IPR003591 -
Rops8g01889 556 SMART LRR_typ_2 163 187 IPR003591 -
Rops8g01889 556 Gene3D Ribonuclease Inhibitor 48 197 IPR032675 -
Rops8g01889 556 SMART LRR_sd22_2 310 339 - -
Rops8g01889 556 SMART LRR_sd22_2 260 285 - -
Rops8g01889 556 SMART LRR_sd22_2 382 408 - -
Rops8g01889 556 SMART LRR_sd22_2 139 168 - -
Rops8g01889 556 Pfam Protein tyrosine and serine/threonine kinase 451 553 IPR001245 GO:0004672|GO:0006468
Rops8g01889 556 Pfam Leucine rich repeat 385 443 IPR001611 GO:0005515
Rops8g01889 556 Pfam Leucine Rich Repeat 141 160 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01889 Rops-Chr8 42928350 42932025 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01889 235 459 Receptor kinase-like Gene Family AT4G08850 35.398 7.56e-30 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Rops8g01889 PK_Tyr_Ser-Thr 7.1e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01889 - - gmx:100811066 402.134