Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01884 ATGTCTCCTGGTCCAGTGACTCTTCATTTTGAGTTGTTGCATGTCAAGCATTCAACACCTCTTTCAGTGAAACTGGTTCAGGCAAGCACGTTCCCACGTCCATCACGTCACCACGATCATGCAACTCATGCTCCCACGTCCTCCACGTCACCACTCCCTTCGATGGCCAGCAGCCTGGGACCTCGGGTCTCCGCAAGAAGCAAATGGAATGAGGGATATTTGGGGTTGTGCAAAATGGATTGCTTTCTACTCCTGCAATATCAACTGTTGTACGTGAAAGAAGTAGGGTTGACGGGTCCAAGGCTCATATTCGACCTAAACTCAGCTTCATGCTGCACCCATCGTGCGTACACAGCCTCAGCCCTAACGCGGAGAAGAGAACACGACGTAGCCATGGGGAGGAGACTTGCAAGGTGTTATCGTCAAATTAAAAACAAGCCATACCCCAAGTCACGGTTTTGCCGTGGTGTTCCTGATCCCAAGATCAGAATTTACGATGTTGGTATGAACAAGAAAAGTGTTGATGAGTTTCCTTTCTGTGTCCATCTGGTTAGTTGGGAGAAGGAAAATGTTTCAAGTGAGGCACTGGAAGCTGCTAGGATTGCTTGCAACAAATATATGTCAAAATTTGCTGGAAAGGATGCATTCCACTTAAGTGTTAGGGTACATCCATTCCATGTTCTTAGGATCAACGAGATGCTTTCATGTGCTGGAGACTGTGTTTTGATGCGGCCTGCGGATACTACGAAATCACCCTACGTGGCGCGTATGGAGAAGATCGAGCAAGATAACAGGAACAACGTGAGGGTACGAGTGAGGTGGTATTATTGGCCTGAAGGGTCGATTGGGGGAAGGAGACAGTTCCATAGTGCTAAGGAGCTTTTTCTCTCTGACCATCATGATGTTCAAAGTGCTCACACCATTGAAGGAAAGTGTGTCATTCACGCTTTTAAGAACTATACTAAGCTTGAGAATGTAAGTGTTGAGGATTACTATTGTAGGTTTGAGTACAAGGCTGCTACTGGGGCTTTCACTCCTGACCGTGTTGCTGTGTATTGCAAATGTGAGATGCCTTATAACCCGGACGACCCACACGACTCACCCTCATGCAACTTATGTTGGTAA 1125 0.4693 MSPGPVTLHFELLHVKHSTPLSVKLVQASTFPRPSRHHDHATHAPTSSTSPLPSMASSLGPRVSARSKWNEGYLGLCKMDCFLLLQYQLLYVKEVGLTGPRLIFDLNSASCCTHRAYTASALTRRREHDVAMGRRLARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMNKKSVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLSVRVHPFHVLRINEMLSCAGDCVLMRPADTTKSPYVARMEKIEQDNRNNVRVRVRWYYWPEGSIGGRRQFHSAKELFLSDHHDVQSAHTIEGKCVIHAFKNYTKLENVSVEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDPHDSPSCNLCW* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01884 374 Gene3D Ribosomal protein L10e/L16 132 261 IPR036920 GO:0003735|GO:0005840|GO:0006412
Rops8g01884 374 PANTHER OS08G0421900 PROTEIN 234 364 - -
Rops8g01884 374 Pfam BAH domain 238 347 IPR001025 GO:0003682
Rops8g01884 374 MobiDBLite consensus disorder prediction 32 59 - -
Rops8g01884 374 SUPERFAMILY Ribosomal protein L16p/L10e 135 239 IPR036920 GO:0003735|GO:0005840|GO:0006412
Rops8g01884 374 ProSiteProfiles BAH domain profile. 233 348 IPR001025 GO:0003682
Rops8g01884 374 SMART BAH_4 232 348 IPR001025 GO:0003682
Rops8g01884 374 MobiDBLite consensus disorder prediction 44 59 - -
Rops8g01884 374 CDD Ribosomal_L16_L10e 172 231 IPR016180 GO:0003735|GO:0005840|GO:0006412
Rops8g01884 374 Pfam Ribosomal protein L16p/L10e 143 231 IPR016180 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01884 Rops-Chr8 42795121 42796245 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01884 132 238 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 89.720 1.83e-66 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01884 K25868 - gmx:100800806 241.506