Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01879 ATGAATTGGGGAATAGAAGTTCTCTCTCCAGCCTCCTATCTCCAAAATTCCAATTGGTTGTTCCAGGAAAGCAAGGGAGCTAAATGGACTCCAGAAGAGAACAAGCTGTTTGAGAATGCTTTGGCTCTTTTTGATAAGGACACCCCAGATCGATGGATGAGGGTGGCAGCTATGATTCCTGGAAAAACTGTTGGTGATGTGATCAAACAGTACAGAGAACTTGAAGAAGATGTGTGTGTCATTGAAGCAGGTTTGATACCAGTTCCTGGGTATAGTACTAGTTCTTTCACATTGGACTGGGTTAACAATCAAGGCTATGATGGGTTCAAGCAATTTTACAGTGTTGGTGGGAAAAGAGGCGCATCTACTAGGCCATCTGAGCAGGAAAGGAAGAAAGGAGTGCCGTGGACTGAAGAGGAGCACAGGCTATTTCTGCTGGGTCTTAAGAAGTATGGTAAAGGGGACTGGAGAAACATCTCTAGGAATTTTGTGACCACAAGGACCCCAACTCAGGTTGCAAGTCATGCTCAGAAGTATTTCATAAGGCAAGTCACAGGAGGGAAGGATAAGAGGAGATCAAGTATTCATGATATCACAATGGTCAATCTCCCAGAAACAAAATCTCCATCATCAGACAGTAACAGGCCTTCTTCTCCAGATCACTCATTGAAGGTTGCAAACCCAAATCAGAATCAGAAATTGCCTGGCATGGTTAAACAGGAATATGACTGGAAATTACCAGATGAGGGCATGCCAATGGTCTTCAATTCTACAAGGCGAAACATTCTTGCAAATCCAATCAATGCAACATCAATGAACTATGCATATGATGCTGGGTTTAGAGTTTTGAAGTTAGATGGAAGATTTGAGTGA 873 0.4284 MNWGIEVLSPASYLQNSNWLFQESKGAKWTPEENKLFENALALFDKDTPDRWMRVAAMIPGKTVGDVIKQYRELEEDVCVIEAGLIPVPGYSTSSFTLDWVNNQGYDGFKQFYSVGGKRGASTRPSEQERKKGVPWTEEEHRLFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQVTGGKDKRRSSIHDITMVNLPETKSPSSDSNRPSSPDHSLKVANPNQNQKLPGMVKQEYDWKLPDEGMPMVFNSTRRNILANPINATSMNYAYDAGFRVLKLDGRFE* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01879 290 FunFam transcription factor MYB1R1 134 185 - -
Rops8g01879 290 SUPERFAMILY Homeodomain-like 28 82 IPR009057 -
Rops8g01879 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Rops8g01879 290 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 23 258 IPR043363 -
Rops8g01879 290 SMART sant 132 182 IPR001005 -
Rops8g01879 290 SMART sant 25 77 IPR001005 -
Rops8g01879 290 MobiDBLite consensus disorder prediction 199 233 - -
Rops8g01879 290 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Rops8g01879 290 Pfam Myb-like DNA-binding domain 28 73 IPR001005 -
Rops8g01879 290 MobiDBLite consensus disorder prediction 185 233 - -
Rops8g01879 290 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Rops8g01879 290 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Rops8g01879 290 Gene3D - 134 184 - -
Rops8g01879 290 NCBIfam myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Rops8g01879 290 CDD SANT 135 180 IPR001005 -
Rops8g01879 290 CDD SANT 28 74 IPR001005 -
Rops8g01879 290 FunFam Transcription factor SRM1 21 88 - -
Rops8g01879 290 Gene3D - 21 88 - -
Rops8g01879 290 SUPERFAMILY Homeodomain-like 129 183 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01879 Rops-Chr8 42677013 42679108 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops8g01879 Myb_DNA-binding 3.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01879 - - gmx:100775697 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01879 8 42677013 42679108 Rops8g01879 8 42677013 42679108 ECH
Rops8g01879 8 42677013 42679108 Rops11g03994 11 74442205 74444201 ECH
Rops8g01879 8 42677013 42679108 Rops9g00872 9 14229417 14231323 ECH
Rops11g03994 11 74442205 74444201 Rops8g01879 8 42677013 42679108 ECH