Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01850 ATGCTTCAGATTCGGCTTAGTAAGACTCCTGCCTCAGAAGGATCGACAGGGGTGAAGATGTCACCTGTTGAGACTGTTACTGTAGCATGCCCTGATCATCTGGTCCTTGCTGATCTTCCTGTTGCAAAGGGCATTGGGGCAGCTACTGCTGCTTCCCTTGTTAAGACTTTGGGCCGTAGATCACGCCGCCAGCTTGGTGAGCGAGTCCATTTCTGTGTTCGCTGTGATTTCCCCATTGCTATCTATGGACGACTGAGCCCTTGTGAGCATGCTTTCTGTCTCGATTGTGCTAGAAGTGATTCAATGTGCTACCTGTGTGACGAACGAATCCAGAAGATTCAGACAATCAAAATGATGGAAGGAATCCTCATATGTGCAGCTCCTCATTGTCTCAAGTCTTTCTTGAAGAAGGCCGATTTTGAATCTCATATCCAGGACAGCCATGCTAACCTTCTTCGTCCCAATGCAGATAAAGAAGATGGAAATGAGTCAGAGGCACAGAGTGTTAGGCAATCTACAGCTTCAGATTCCACTGCTAGAGGTCCCCAGAGGCCAGTTTTTTCTCCGGGTTCAAATTCACAGCAACATGATCTGGATGACAAAACTCGTCGGCAGCCTCCAAGAGAACAAGCTCCTTCAAGGTCATCTATGCAGCCGAAGCCACCAATTTTTGGTCAACAACATCACCCTTCTGATACCATGTCTGGCTCTGTTGGAGGCATACAACAAGGCTTTCATCAACAAAGTTTTGACATGCAGCATCCCCCACAAGAACCTTCCCAGTTTGCTGACAGGCAGCAAGCAGTTGGTCCAGATACCTCATTTCCTGACTATCCGACAATGCACTCTGCACAACCTTCCAATATCCCCTCACTGGTTACTTCGAACCCAATGTTGAACCCACCTATGCCATTTGGTTATCCTCCTTACCCACAAGAACGAGGTCAACCATTTTATGCTGCTCCCTATGATATGCCTAGGCAGGACTCAGCTTCTGATATAGGTGGGGACCAGAGTTCTTTATTGGGTTTCCCACAAGGTGGCCCAAATTTTCCAGGAAATTATCCCCAGCCCTGGCAGGTAGGAATTGGTGGTGTGCCTTTTGAACAAGCACAGGGTGGTATGGTTGTGGATCCAAGGGATGCCAAAGGTGTATTGGCACCACAGCCCATGCCCCTCCCACCACCTCCCCCACCTCCACCCCACATGTCACATTTGAAACAGAACTACTATTCTGGTGAGCTTGGACATGATGGTCAGGGTTATGGGTGGCAGCATGATAACCGTGATAGCTTTGGTGGCCAAGGCTAG 1311 0.4882 MLQIRLSKTPASEGSTGVKMSPVETVTVACPDHLVLADLPVAKGIGAATAASLVKTLGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSMCYLCDERIQKIQTIKMMEGILICAAPHCLKSFLKKADFESHIQDSHANLLRPNADKEDGNESEAQSVRQSTASDSTARGPQRPVFSPGSNSQQHDLDDKTRRQPPREQAPSRSSMQPKPPIFGQQHHPSDTMSGSVGGIQQGFHQQSFDMQHPPQEPSQFADRQQAVGPDTSFPDYPTMHSAQPSNIPSLVTSNPMLNPPMPFGYPPYPQERGQPFYAAPYDMPRQDSASDIGGDQSSLLGFPQGGPNFPGNYPQPWQVGIGGVPFEQAQGGMVVDPRDAKGVLAPQPMPLPPPPPPPPHMSHLKQNYYSGELGHDGQGYGWQHDNRDSFGGQG* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01850 436 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Rops8g01850 436 CDD RING-HC_HAKAI-like 70 119 IPR040380 -
Rops8g01850 436 MobiDBLite consensus disorder prediction 209 268 - -
Rops8g01850 436 MobiDBLite consensus disorder prediction 278 298 - -
Rops8g01850 436 FunFam E3 ubiquitin-protein ligase Hakai 69 123 - -
Rops8g01850 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
Rops8g01850 436 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 426 IPR040383 GO:0016567|GO:0061630
Rops8g01850 436 MobiDBLite consensus disorder prediction 388 404 - -
Rops8g01850 436 MobiDBLite consensus disorder prediction 166 195 - -
Rops8g01850 436 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Rops8g01850 436 MobiDBLite consensus disorder prediction 381 436 - -
Rops8g01850 436 MobiDBLite consensus disorder prediction 153 366 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01850 1 433 C2H2 Transcription Factor Family AT5G01160 45.721 2.29e-112 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01850 K15685 - gmx:100817582 769.229