Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01845 ATGTCAACTTTGCAGATGTCCCATGTTGATTTAGAACAAGGGAATCATCGTCGTTCGGTTGTTGGAAGTGATGTGAGTGGTGAAGGGAGCGTATGCTTCTCAGATGCTGATGATGGTTCTAGTTATTCTCGTTTCTATTCAACAAATGGTGGCTCTTGTGATGATTACAGCTTTGCTTGTGTTTCTGATCCTGAGGTTGGGGGTGTTCTTGATTCTGGGAGAGCTTCTTCTGTTACTGATTGTTCTGTGGAGCTGGAAATTAGGACTGGGGTTCCTGAGATTAAGGTGCATTTGGCTAAAGTGGAGAGGGATTGTAGGATTTGTCACATGGGTTTGGAGAGTGATAGTCATGAATCTGGCGTTCCCATTGAGTTAGGTTGTTCTTGTAAGGATGATTTGGCTGCTGCTCACAAACACTGTGCTGAGGCCTGGTTCAAGATTAAGGGAAATAGGACCTGTGAAATTTGTCATTCAATTGCACGCAATGTTTATGGAGCAAATGAGGAGTCAACAGAACATGTAAGTGACAATAACAATGCAACTGCAACAGCCACACTCTCAACCCCTGCTCCTTCAACTGAAACTCCAAGATTTTGGCATGGCCATCGCTTCCTAAATTTTCTACTTGCTTGTATGGTTTTTGCATTTGTCATATCATGGCTTTTTCACTTCAATGTGCCATCATCATAG 690 0.429 MSTLQMSHVDLEQGNHRRSVVGSDVSGEGSVCFSDADDGSSYSRFYSTNGGSCDDYSFACVSDPEVGGVLDSGRASSVTDCSVELEIRTGVPEIKVHLAKVERDCRICHMGLESDSHESGVPIELGCSCKDDLAAAHKHCAEAWFKIKGNRTCEICHSIARNVYGANEESTEHVSDNNNATATATLSTPAPSTETPRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01845 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 165 IPR013083 -
Rops8g01845 229 ProSiteProfiles Zinc finger RING-CH-type profile. 97 163 IPR011016 GO:0008270
Rops8g01845 229 SMART ringv_2 104 157 IPR011016 GO:0008270
Rops8g01845 229 SUPERFAMILY RING/U-box 102 159 - -
Rops8g01845 229 CDD RING_CH-C4HC3_MARCH 105 157 - -
Rops8g01845 229 PANTHER ZINC FINGER, RING-CH-TYPE 17 228 - -
Rops8g01845 229 Pfam RING-variant domain 105 156 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01845 Rops-Chr8 41896906 41900245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01845 69 229 C3H Transcription Factor Family AT5G05830 62.963 1.93e-70 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01845 - - gmx:100808666 402.905