Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01800 ATGGCTGAGGAGGGTTTTGAGCATTACCATATCCCACAACAAAGCAGAAGAGATAAGCTTAGAGTTTTGGGTCAGAACCAACCTGGTTTTGTTGAATCTTCCACTATCCTTCACCCTACTTGTGCAACTTTACCTTCTCTCTACGATCCTTCACTTATTTCCTCTCATTTGTTAGCTTGTGCCAATCAACAAGGTCACGGGTTTCATAGTAGCCAGAACAACGTTCCTCTTTCTGCTAACAACCAAGCCTGCAAAGAAGCAAATCAAAGTGGGGCTGTGAAGGAAGAAGGTTGTTCCAATTCGATGATGGGATTTGCAGTGGGAGGAACAGTAGGAGGGGTTGTGAATGGTTCTTCTTCTGCTTCTTCTTCATCATCTTCGATTTCCCACCATGCTTACTTGGATCCTGAATCTTCTTTGCATTTAAACCAAAGTGCTGCTGCTGCAATTCAAGTTATAAACAATAACCCTTTTCTTTACCAGGCACAAAGCCTTCAGAACCTTCGAGAATTTGATCAGGGTTACAATGATGGTAGTGAACTAATGGTGCTAAAACCCGAGCCTTTATCTTTGTCTTTGTCATCCCACAATCATCAGCCACTGGAGCTGAATCTTCAGCGATATGGGCCTGCTATTTATAGTGATAAAGTTGGTGTTGGTGTTGGTAGTGGTGGGTGTGTGATTCCGGGTTTGGTTGGAGGAGGCAGTGCTTCTTCTGCCTCGAATGAAGTTTCGAGGAACTCAGTTCCACTTGGACCATTTACGGGTTATGCCTCGGTATTGAAAGGATCGAGATTCTTGAAGCCTGCACAACAGTTATTGCAAGAGTTATGTGATGTTGGAGTTCGTGGAATTTACACTGAGAAAATTACTGCTGATGCATCTTTGATGGAAAGTTTAAGTGCTAGTGAAATTGGTTTGGAAGATCCACTTGGAAATGGGAATGAAGGTAGGAAGAACAAGTCCATGCTATTAACCATGCTTGACGAGGTTTACAGGAGGTACAGACATTATTATCAACAGATGCATGCAGTAGTAACTTCATTTGAGTATGTCGCTGGCCTCGGTAATGCAGCCCCATATGCAAGTTTGGCTATAAATGCCATGTCCAAACATTTTAGATGCTTGAAGAATGCAATCACTGACCAGCTTCAGTTTATCAGTAAGGCTCATTTTCAGATAAGCGATAGGAAGGATGAATCTCCAAGGTTCGGCCAAAGGCCAGGGTTTCCAGACCATCAACAACCTATTTGGCGACCCCAAAGAGGACTCCCTGAGCGCGCTGTGAGTGTTCTCAGGGCATGGTTGTTTGAACACTTTCTGCACCCTTATCCCACCGATACGGACAAGCTAATGTTGGCTAAACAAACAGGTCTATCTCGTAGCCAGGTGTCTAATTGGTTTATTAATGCAAGAGTAAGACTTTGGAAACCAATGGTGGAAGAAATACATATGCTTGAATCACATCAAGCTCAAAGAAAATCACAAAGAGAAGAACATGGTAGGAACAATTTCAGTGACCACTTACCTTCAGATAATGCTACTGAGAATCCATCTACCTCCATGGATAAGTTTCAGGATGTCTCTTGTAAACGCACTAGAAATGAAATTCCTAACATGCCAGTGAGGAGTCAAGAACAACTGAATCAGACAAACACAAGCAATCAGCAAGTGGGTGTTGGAGTGAGCATGGGGAATGGTGTTTCTCTGACACTTGGTCTTCATCAAAATCATGGGATTGGGTTCTCTGAGCCCTTTAGTATGAGTGAAGCTCAGCGTTTTGGTCTTGCCCTTCAACCTGAGGGCTATGTTACAAGTGGTTTTGAATCACAAAATCGACATTTTAGAAGAGATGTTATTGGAGGGCAACTGTTGCATGACTTTGTAGGCTGA 1893 0.4305 MAEEGFEHYHIPQQSRRDKLRVLGQNQPGFVESSTILHPTCATLPSLYDPSLISSHLLACANQQGHGFHSSQNNVPLSANNQACKEANQSGAVKEEGCSNSMMGFAVGGTVGGVVNGSSSASSSSSSISHHAYLDPESSLHLNQSAAAAIQVINNNPFLYQAQSLQNLREFDQGYNDGSELMVLKPEPLSLSLSSHNHQPLELNLQRYGPAIYSDKVGVGVGSGGCVIPGLVGGGSASSASNEVSRNSVPLGPFTGYASVLKGSRFLKPAQQLLQELCDVGVRGIYTEKITADASLMESLSASEIGLEDPLGNGNEGRKNKSMLLTMLDEVYRRYRHYYQQMHAVVTSFEYVAGLGNAAPYASLAINAMSKHFRCLKNAITDQLQFISKAHFQISDRKDESPRFGQRPGFPDHQQPIWRPQRGLPERAVSVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLESHQAQRKSQREEHGRNNFSDHLPSDNATENPSTSMDKFQDVSCKRTRNEIPNMPVRSQEQLNQTNTSNQQVGVGVSMGNGVSLTLGLHQNHGIGFSEPFSMSEAQRFGLALQPEGYVTSGFESQNRHFRRDVIGGQLLHDFVG* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01800 630 SUPERFAMILY Homeodomain-like 420 485 IPR009057 -
Rops8g01800 630 Gene3D - 421 483 - -
Rops8g01800 630 ProSiteProfiles 'Homeobox' domain profile. 415 478 IPR001356 GO:0003677
Rops8g01800 630 MobiDBLite consensus disorder prediction 487 506 - -
Rops8g01800 630 MobiDBLite consensus disorder prediction 507 526 - -
Rops8g01800 630 SMART prehox3 255 382 IPR006563 -
Rops8g01800 630 MobiDBLite consensus disorder prediction 487 560 - -
Rops8g01800 630 Pfam Homeobox KN domain 435 474 IPR008422 GO:0003677|GO:0006355
Rops8g01800 630 CDD homeodomain 418 479 IPR001356 GO:0003677
Rops8g01800 630 Pfam Associated with HOX 260 381 IPR006563 -
Rops8g01800 630 MobiDBLite consensus disorder prediction 397 418 - -
Rops8g01800 630 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 127 500 - -
Rops8g01800 630 SMART HOX_1 418 482 IPR001356 GO:0003677
Rops8g01800 630 MobiDBLite consensus disorder prediction 538 560 - -
Rops8g01800 630 FunFam BEL1-like homeodomain protein 9 421 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01800 Rops-Chr8 40627913 40632995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01800 171 630 Homeobox Transcription Factor Family AT5G02030 50.200 4.94e-125 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Rops8g01800 POX 3.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01800 - - vun:114185080 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01800 8 40627913 40632995 Rops8g01800 8 40627913 40632995 ECH