Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01790 ATGAACCCTAACTCTCACACGCAGAAGAAGGACGCCATCTCTCAACTAAAGGAGCTTCGCGACGACATTGTTTCTGCCAAGGCCGGTTGCAGCTCGAATCTCCGATTGCATCTCCGCCAAACGTTGGGGAATGGTGCAAATGACTTAACTCAGCTTGCTTTAATAAGGTCCAAGTTCTCATCTTGTGATATTCTGGATCTCATTGAAAAGAAACCTGGTGGCATTATTGCTCTTCTGGATGAAGCTTGTATGTTTCCTAGATCAACACATGAAACCTTTGCTCAAAAACTGTATCAGACCTTCAAAAACCATAAAAGATTTAGCAAGCCCAAATTATCACGCAGTGACTTCACAATTTGCCATTATGCTGGTGATGTCACTTATCAAACTGAATTATTCCTTGACAAGAACAAAGATTATGTTGTTGCAGAGCACCAATCACTTCTTTATGCTTCCAAATGCCCCTTCGTATCAGGCTTGTTTCCCCCTTCACCTGAGGAATCTTCCAAACAATCAAAGTTCTCTTCAATAGGTTCCCGATTTAAGGTTGTGGAGGTCAATATGAAAGTTGAGGAACCTGGTGAGAATAATGTTCACAATAATGCATTCTATGCTCAAGAGACTTTGCTCAGATCTGAATTAGAAGCCATGCGTGATTGCAATCCTTTGACTGCTCGACATTGGATTGTAAGGAACACAAGAACTGGCAATAGAACCGGACAATTGATGTGCTACAAGCTAGTACCGTGCTCAAACTGCTTGCCATTGGCGGGTTCTGAGGCCAAGTTTTTAAGAAGAGCTGCTTTCTTGAAGCATAATCTTTGGGTAACAACATATTCTCGCAATGAGATGTTTCCTGGAGGAGAATTTCCTAATCAAAATCCGCGTGTTGGCGAAGGACTAGCTTCATGGGTTAAGCAGAATCGACCTTTGGAAGAAACTAATATAGTTCTATGGTATGTATTTGGAATCACACATGTTCCTCGTCTAGAAGATCGGCTCGTTATGCCAAGAGAACACATTGGCTTTATGCTCATGCTGATAAATGAAGGAGAGAAGAAGGTTGTGATAAGCGACCGATGTGGGCAAGATCTTGATTGTCTCCTATCCTCAATGTTTGGGCTATATGGAATGGGGGATGTGATGATTTTAAATGCCCTGCTGAAGGTTTTAGCCTTCCATCAATCCTTCTCTGCAATGATGATATGCCATGTTGGGTGGTGCTTGCAAAAGCTACTTAACTTCCATCGAGAGGGACTTAGCAGTGATAATCTCCTCCTATTCACTGTTAGAACTGTGAGCATATCATTGCTCTTAAGCATAGAGTTTAGAATATGTATCCCAACTCTTCATACGGATCCAACTTATAAGTGTAATTTGCATAACCTCTCCAAATTGGAGCTCTCTGAGCAAGTGTTTTCACAAAATAAGCTTGCAAGTGGGCTAGGCTATGCTCAATACTCTGCTTTAGCACTTGATCTTGCAACCACATTTTGCTTCTGA 1503 0.4178 MNPNSHTQKKDAISQLKELRDDIVSAKAGCSSNLRLHLRQTLGNGANDLTQLALIRSKFSSCDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLSRSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQSLLYASKCPFVSGLFPPSPEESSKQSKFSSIGSRFKVVEVNMKVEEPGENNVHNNAFYAQETLLRSELEAMRDCNPLTARHWIVRNTRTGNRTGQLMCYKLVPCSNCLPLAGSEAKFLRRAAFLKHNLWVTTYSRNEMFPGGEFPNQNPRVGEGLASWVKQNRPLEETNIVLWYVFGITHVPRLEDRLVMPREHIGFMLMLINEGEKKVVISDRCGQDLDCLLSSMFGLYGMGDVMILNALLKVLAFHQSFSAMMICHVGWCLQKLLNFHREGLSSDNLLLFTVRTVSISLLLSIEFRICIPTLHTDPTYKCNLHNLSKLELSEQVFSQNKLASGLGYAQYSALALDLATTFCF* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01790 500 Pfam Copper amine oxidase, enzyme domain 182 346 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Rops8g01790 500 SUPERFAMILY Amine oxidase catalytic domain 182 346 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Rops8g01790 500 Gene3D Copper amine oxidase, catalytic domain 176 357 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Rops8g01790 500 PANTHER COPPER AMINE OXIDASE 183 346 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Rops8g01790 500 Pfam Myosin head (motor domain) 59 173 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops8g01790 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 182 IPR027417 -
Rops8g01790 500 SMART MYSc_2a 1 267 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops8g01790 500 ProSiteProfiles Myosin motor domain profile. 1 182 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops8g01790 500 Gene3D - 41 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01790 Rops-Chr8 40284424 40291349 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01790 63 182 Myosins gene family AT1G04160 86.667 2.47e-64 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01790 K00276 - cave:132175997 302.753