Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01788 ATGGAGCCACGAAAGCTTGTGGTCTTGGGCATCCCGTGGGACATTGATACGGAGGGCCTGAGAGAATACATGAGCAAATTTGGTGATCTGGAAGATTGTAGTGTTATGAGGGAAAGGTCAACTGGCCGGTCTCGTGGTTTTGGATATGTTACATTTGCATCAGTGGATGATGCTAAGAATGTATTATCCGGCGAACACGTTCTTGGTAACAGGATGCTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGGGCACCGGTCAGAAAAGTTACCAGAATCTTTGTGGCCCGAATTCCACCATCAGTAACAGAAGCAACCTTTAGAAGTCATTTTGAGAAATATGATTCTGTACAGAATTTGATGGCAGAAACCCATGAACTGCGAGGTTCTACCGTGGTGGTTGATCGAGCAACACCAAAGGAAGATGATTTCAAGCCAATTGGCAGAATGTCACAGGGAGGATATGGTGCATACAATGCATATATTTCTGCAACAACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGTTCAATTTATGGAAGGGGAGAGCCTGTTCGTGGAATGAGCAAAAAGATTTTTGTTGGTCGTCTTCCCCAAGAGGCAACCACTGAGGATCTTCGCCAGTATTTTGGAAGATTTGGCCGTATATTAGATGTCTATGTTCCCAAGGATCCCAAGAGATCAGGTCATAGAGGTTTTGGTTTTGTGACTTTTGCTGAAGATGGTGTTGCCGATCGTGTCTCTCGAAGGTCTCATGAGATCTGTGGACATCAGGTCGCTATAGATTCGGCCACACCTCTTGATGATGCAGGGCCCAGTGGAAATTTTATGTTGAATAGCATGGATTCTTTTGGGGGATTTGGCGGTCCTGCTGCCAGCTTTGGTGCCAATGCCACTGCCAAGATTAGTGTAGAAGCATCCCTGGCTGGAGCAATCATCGGGAAGGGTGGTGTGAACTCAAAGCAGATCTGTCGCCAAAGGTCCGAGCCTTAA 1011 0.4659 MEPRKLVVLGIPWDIDTEGLREYMSKFGDLEDCSVMRERSTGRSRGFGYVTFASVDDAKNVLSGEHVLGNRMLEVKVATPKEEMRAPVRKVTRIFVARIPPSVTEATFRSHFEKYDSVQNLMAETHELRGSTVVVDRATPKEDDFKPIGRMSQGGYGAYNAYISATTRYAALGAPTLYDHPGSIYGRGEPVRGMSKKIFVGRLPQEATTEDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPLDDAGPSGNFMLNSMDSFGGFGGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQRSEP* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01788 336 ProSiteProfiles Type-1 KH domain profile. 303 336 - -
Rops8g01788 336 Gene3D - 193 276 IPR012677 -
Rops8g01788 336 SUPERFAMILY RNA-binding domain, RBD 3 141 IPR035979 GO:0003676
Rops8g01788 336 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Rops8g01788 336 FunFam RNA-binding family protein isoform 1 193 276 - -
Rops8g01788 336 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
Rops8g01788 336 SMART rrm1_1 197 268 IPR000504 GO:0003723
Rops8g01788 336 SMART rrm1_1 5 76 IPR000504 GO:0003723
Rops8g01788 336 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 252 IPR000504 GO:0003723
Rops8g01788 336 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 63 IPR000504 GO:0003723
Rops8g01788 336 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 272 IPR000504 GO:0003723
Rops8g01788 336 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 3 121 - -
Rops8g01788 336 SUPERFAMILY RNA-binding domain, RBD 195 294 IPR035979 GO:0003676
Rops8g01788 336 Gene3D - 2 85 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01788 Rops-Chr8 40256502 40257512 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01788 6 245 Eukaryotic Initiation Factors Gene Family AT2G36660 22.541 3.93e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01788 K14411 - gmx:100795240 519.62