LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops8g01786	ATGCAGGGGAAAGTGAAGGCATCCCCTAAGGATGATCCATCCAAGTCACCCAAGCTTACTGCCTTTTTGGGTTGCAAGGCTGGTACGACTCACATTGTCAGAAGGAGAGGGCACGAACAGATTAAGGAGCTTCTCACGAGCTCGTTAAATGCTGACAGCAGTAGTATAAATCTTGAAACTTCGGCCAACTTGTCTTTGGAGGAAAAAGTTGCAAATTTTATTCAGAATGGAGATTTGGATCCAGTTGAAGATAATGTCTCTGGCAATGGAGATGATTCTCAGGAAAGCGAAGTGTATATTGTATCAGAACCTAATGGTGATGTGCCATCAGGCGCCCATCCACCGAAAGATAATAATGTCATGGCACTTAATGGGAACTCATTGACATCAAAACAAATTGTTCCATCTGTAACATTGGATCATCTTCAGGATGATCACATGCCACATGAAGATCTAACTACTCATTTTGACGAGGATTCGGATGATGAGGATCCAAAAGTGCAAAACCAAAGTGAGATAAAACATCTCAAGTTCATGCTGTATCAGAAGGAATTGGAGCTGTCTCGGATGAAGGAACAGATTGAGAAGGAAAAGCTTGCTTTGTCTGTCTTGCAAACCAAGGCAGAGGCAGAAATCAGCAAAGCCAGAAAACTTATATCTGAAAAAGATGCAGAATTACACGACGCTGAAGAAAGTCTTTCAGGACTCAAGGAGGTCCAGATTGAGCCCTATGACGATGCTGATGAAGTGGAGGTGGCCGGTAGCTTCAATGGTTGGCATCACCGAATAAAACTGGATCCTCAGCCATCAACTAGTGTTACAGACCTTGGTGTATCAAGGAGATCCAGATTTCGGTCAACGATGCTGTGGCTTTATCCTGGTGTGTATGAGATAAAATTTGTTGTTGATGGCCACTGGAGAACAGATCCTCAAAGGGAGGGGAAAGTGAAGGCATCCCCTAAGGATGATCCATCCAAGTCACCCAAGCTTACTGCCTTTTTGGGTTGCAAGGCTGGTACGACTCACATTGTCAGAAGGAGAGGGCACGAACAGATTAAGGAGCTTCTCACGAGCTCGTTAAATGCTGACAGCAGTAGTATAAATCTTGAAACTTCGGCCAACTTGTCTTTGGAGGAAAAAGTTGCAAATTTTATTCAGAATGGAGATTTGGATCCAGTTGAAGATAATGTCTCTGGCAATGGAGATGATTCTCAGGAAAGCGAAGTGTATATTGTATCAGAACCTAATGGTGATGTGCCATCAGGCGCCCATCCACCGAAAGATAATAATGTCATGGCACTTAATGGGAACTCATTGACATCAAAACAAATTGTTCCATCTGTAACATTGGATCATCTTCAGGATGATCACATGCCACATGAAGATCTAACTACTCATTTTGACGAGGATTCGGATGATGAGGATCCAAAAGTGCAAAACCAAAGTGAGATAAAACATCTCAAGTTCATGCTGTATCAGAAGGAATTGGAGCTGTCTCGGATGAAGGAACAGATTGAGAAGGAAAAGCTTGCTTTGTCTGTCTTGCAAACCAAGGCAGAGGCAGAAATCAGCAAAGCCAGAAAACTTATATCTGAAAAAGATGCAGAATTACACGACGTGAAGAAAGTCTTTCGGGACTCAAGGAGGTCAGATTGA	1656	0.4293	MQGKVKASPKDDPSKSPKLTAFLGCKAGTTHIVRRRGHEQIKELLTSSLNADSSSINLETSANLSLEEKVANFIQNGDLDPVEDNVSGNGDDSQESEVYIVSEPNGDVPSGAHPPKDNNVMALNGNSLTSKQIVPSVTLDHLQDDHMPHEDLTTHFDEDSDDEDPKVQNQSEIKHLKFMLYQKELELSRMKEQIEKEKLALSVLQTKAEAEISKARKLISEKDAELHDAEESLSGLKEVQIEPYDDADEVEVAGSFNGWHHRIKLDPQPSTSVTDLGVSRRSRFRSTMLWLYPGVYEIKFVVDGHWRTDPQREGKVKASPKDDPSKSPKLTAFLGCKAGTTHIVRRRGHEQIKELLTSSLNADSSSINLETSANLSLEEKVANFIQNGDLDPVEDNVSGNGDDSQESEVYIVSEPNGDVPSGAHPPKDNNVMALNGNSLTSKQIVPSVTLDHLQDDHMPHEDLTTHFDEDSDDEDPKVQNQSEIKHLKFMLYQKELELSRMKEQIEKEKLALSVLQTKAEAEISKARKLISEKDAELHDVKKVFRDSRRSD*	552

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops8g01786	551	MobiDBLite	consensus disorder prediction	1	20	-	-
	Rops8g01786	551	PANTHER	PROTEIN PTST HOMOLOG 3, CHLOROPLASTIC	46	313	-	-
	Rops8g01786	551	Coils	Coil	498	518	-	-
	Rops8g01786	551	MobiDBLite	consensus disorder prediction	147	167	-	-
	Rops8g01786	551	CDD	E_set_AMPKbeta_like_N	238	311	-	-
	Rops8g01786	551	Gene3D	Immunoglobulins	224	323	IPR013783	-
	Rops8g01786	551	MobiDBLite	consensus disorder prediction	458	478	-	-
	Rops8g01786	551	Coils	Coil	187	207	-	-
	Rops8g01786	551	MobiDBLite	consensus disorder prediction	310	329	-	-
	Rops8g01786	551	MobiDBLite	consensus disorder prediction	310	324	-	-
	Rops8g01786	551	Coils	Coil	212	239	-	-
	Rops8g01786	551	Pfam	Glycogen recognition site of AMP-activated protein kinase	245	313	IPR032640	-
	Rops8g01786	551	SUPERFAMILY	E set domains	237	312	IPR014756	-
	Rops8g01786	551	Pfam	Ribosomal protein L3	312	346	IPR000597	GO:0003735\|GO:0005840\|GO:0006412
	Rops8g01786	551	Pfam	Ribosomal protein L3	2	35	IPR000597	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops8g01786	Rops-Chr8	40095528	40118431	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops8g01786	313	345	Cytoplasmic Ribosomal Protein Gene Family	AT1G61580	72.727	5.73e-08	53.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops8g01786	-		-	aprc:113871221	384.415