Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01764 ATGGAGCAGGATCAATGTTTGATGTTGACTAAGAGAAAGTTCTCTTTGAGCTCTAATCTTACTTCACCAACTAATTACCCTTCCTCCTATGATGACTCATGGGAGGAGCAAGCCTTTGCAAAAGATGCAGCTGGGTCAGATTGCATATGGCCACCAAGATCATATTCTTGTAGCTTTTGCAAAAGAGAATTCAGGTCAGCACAAGCTCTAGGTGGCCACATGAATATTCATAGAAGGGATAGAGCAAGACTAAAGCAGCCATCTAGTCCCCCAAATTATGAAATTCTGAATCATGATCTTGAAACTACTACTCACCCCCACAATAATCCAGCTCAAAATTCTTTTACATCTTTGGGTTACCTGTACCCATCTTCTCTTAGTGGATTGGATTATAGCAGTAACCCTAATTCTGATCCTTCTCAAGTTCTTGCTTCACCTTCTAAGGTTTTAGCTACATCAGTTGATAAGAATTGCAGAGAGAAAACCGCTATTCCTCTTTATAATTCTTCTATTTTACATGGATGCCATGAGATTTCGCTTCATCATTCTTCTAAATCCTGGTCAGAATTAGCTGAAGACTTTAGATCATATTCACATAAGTTCAACCCTGAAGCTGGTATTGAGAAAATTTCGATGGGATTGGATCCTGGGTGGAGGAATGAGGGGTATGGTGATGAAACCAACGTGGCTGTGAGCTTGAACTTGTTTGTGTGCCGAACTCACCCACCTGTGCAATTTGAGACAAGAGAGACAGATGTAAGTTTCAAGAAGAGGAAAACAGATGGCCCATCCGTTCCATTCTTGTCCAAATCAAGTTCAGTAGACAGACATCATTTGCAGTCACAGATGTATGAATTTAGCCCTAGCTCCATGGAAGAGCTAGATCTGGAGCTAAGGCTTGGTTACAAGCCCAAGGTATAG 921 0.4126 MEQDQCLMLTKRKFSLSSNLTSPTNYPSSYDDSWEEQAFAKDAAGSDCIWPPRSYSCSFCKREFRSAQALGGHMNIHRRDRARLKQPSSPPNYEILNHDLETTTHPHNNPAQNSFTSLGYLYPSSLSGLDYSSNPNSDPSQVLASPSKVLATSVDKNCREKTAIPLYNSSILHGCHEISLHHSSKSWSELAEDFRSYSHKFNPEAGIEKISMGLDPGWRNEGYGDETNVAVSLNLFVCRTHPPVQFETRETDVSFKKRKTDGPSVPFLSKSSSVDRHHLQSQMYEFSPSSMEELDLELRLGYKPKV* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01764 306 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Rops8g01764 306 Gene3D Classic Zinc Finger 51 106 - -
Rops8g01764 306 Pfam C2H2-type zinc finger 55 78 - -
Rops8g01764 306 PANTHER OS07G0101800 PROTEIN 21 304 - -
Rops8g01764 306 SMART c2h2final6 55 77 IPR013087 -
Rops8g01764 306 SUPERFAMILY beta-beta-alpha zinc fingers 52 81 IPR036236 -
Rops8g01764 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01764 Rops-Chr8 39544377 39545297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01764 28 304 C2H2 Transcription Factor Family AT2G37740 33.019 4.56e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops8g01764 zf-C2H2_6 1.6e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01764 - - vra:106758996 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01764 8 39544377 39545297 Rops8g01764 8 39544377 39545297 ECH
Rops8g01764 8 39544377 39545297 Rops9g00932 9 15134446 15135210 ECH