Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01748 ATGCAACTCGTATGGCGACATGCACGTGACTCTCAAGGTCCCCACCTAGCACGAGAGTGTGAGTCACCGTCCCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTAGTTTGGAACGTACAAGGATTGCAGAGATCCTTAAAGATAGTCCATCTTGGTTTCGAGAGTGTCGGAGCCTAGAAGTTTTCACCATGTTTCCTGCGGGAAATGGAGGAACCATTGAACTTGTTTACACTCGGACTTATGCTCCAACGACACTGGCTCCTGTCCGGGATTTCTGGACTCTTAGATACACTACAGGGGCTGTGGAGGACGTCGGGGATGAGGTCGTGGAGATCCTGGAGGAATACGAAAGTGGCGAGGATGTGAGTGAAGCATGCCACTGCATTCTCGACCCCAGGGTGCCTTTCTTCAACCATGAGGTGGTGAAGAAAGCTTTGTTCATGGCCACGTTGAAAAAGTGTCCACCCAGCCCAAAGAATTCGGTCTTGTAG 537 0.514 MQLVWRHARDSQGPHLARECESPSPGPDSVGIFAISQSCSGVAARACGLVSLERTRIAEILKDSPSWFRECRSLEVFTMFPAGNGGTIELVYTRTYAPTTLAPVRDFWTLRYTTGAVEDVGDEVVEILEEYESGEDVSEACHCILDPRVPFFNHEVVKKALFMATLKKCPPSPKNSVL* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01748 178 SUPERFAMILY Bet v1-like 25 115 - -
Rops8g01748 178 Pfam MA3 domain 123 165 IPR003891 -
Rops8g01748 178 SUPERFAMILY ARM repeat 117 164 IPR016024 -
Rops8g01748 178 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 24 119 IPR044830 GO:0003700
Rops8g01748 178 Gene3D - 106 170 - -
Rops8g01748 178 Pfam START domain 24 115 IPR002913 GO:0008289
Rops8g01748 178 ProSiteProfiles MI domain profile. 119 178 IPR003891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01748 Rops-Chr8 39180233 39181188 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01748 25 114 Homeobox Transcription Factor Family AT5G60690 88.889 2.85e-51 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01748 K09338 - gmx:100813804 175.252