Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01737 ATGATGATGAATCGTGGTGGTGAAGAAGATGAGCTTTATGAGCAACTATGGAAAGCATGTGCAGGACCCCATGTGGAAGTTCCTCGTGCTGAACAAAGGGTGTTCTATTTTCCTCAGGGTCACATGGAACAATTAGAAGTATCAACAAATCAGGAACTGAATCAGAGGATTCCACTGTTCAAACTTCCTACAAAGATCCTTTGTCGTGTCGTCAACGTCCATTTGCGGGCTGAACAAGAAACAGATGAGGTATATGCACAGATTACTCTGGTGCCGGAATCTAATCAAACTGATCCTACAAGCCCTGATCCCTGCCCTGCTGAACTTCCAAGGCAAGAAATCCACTCCTTTTGCAAGGTCTTAACTGCCTCAGATACCAGCACTCATGGTGGTTTATCTGTTCTCAGGAAACATGCCAATGAATGCCTTCCAACCTTGGATATGTCTCAATCAACCCCAGCTCAGGAATTGGTTGCTAAGGACCTTCATGGTTATGAATGGCGTTTTAAGCATATATTTAGAGGTCAACCACGTAGACACTTGTTCACAACTGGATGGAGTACTTTTCTGACCTCCAAGAGATTAGTTGCTGGAGATACCTTTGTGTTTCTAAGAGGGACCAATGGAGAATTACGTGTTGGAATGAGGCGTCTTGCTTCTCTGCAGAGCAGCATGCCTTCATCTGTGATTTCCAGTCAGAGCATGCACCTAGGAGTTCTTGCAACTGCATCTCATGCTGTTGCAACTAAGACTCTTTTTGTTGTATATTATAAGCCCAGGATGAGCCAGTTCATTGTAAGTGTGAACAAGTATTTGGAGGCTATCAACCAAAAATGTAGTGTTGGTATGAGGTTCAAGATGAGGTCTGAGGGGGATGATTCCCCTGAGACAGACAAAAGATTTTCGGGCACAATTGTTGGATTAGAAGATATTTCTCCTCACTGGGTGAATTCAACATGGAGATCACTCAAGGTTCAATGGGATGAGCATGCATCTATTCCAAGACCTGATAGAGTTTCACCATGGGAGATGGAACCCCTTATGGCTTCAGTTCCTACATCTTCAGTTCAACCTGCTGTTGTTAAGAATAAAAGGCCTAGGCCACCCAGTGAAGTTCCAGATCTTGAAGACACAACATTTGGTGCCTCTACTTGCTGGGATGCTGGGCTGACCCAATCAGATGTGACACAACTTAGTGTTATGGCTGAACACAAAAGGAGCGACAGTACACATATGTGGTATCATAAGCTGATTGATAATAGTAAAAGCAGCAGCAATGGTATATCAAGGAATCAGACAGAAGGAAGTTGGCTATCTTCTCCTCATTCTAGTGTTCCTTCTCATTTATGTCAGGACACAACTGATGATAGCAAGAGTGCCTCAGTCTCAGCTTGGCCTATTTCAAAAACTCACTCAGAAAGATTGAACAATGATCATTTGCTTGACCAAGTTGACAAGGAGAACAAAGTAGAAGCTGCTACAAGCTGTAGATTGTTTGGTATTGAGCTTCTTGATCATGCCAGGAACTCTCCTGCTGTAGAGAAGGCATCTTTACATGCAGGAAATGCATCAGGAATCACCTCTGATGCAGACCATAAGTCTGATATCTCAAAGGATTCTAAAGAAAGGAAACAAGAACAGCTGCAAGTATCTACAAAAGACACTCAAAGCAAGCAAAGCTGTAGTAGAAGTTGCACTAAGGTTCAAATGCAGGGTGTTGCAGTGGGTCGTGCTGTCGACTTAACCACATTGGATGGGTATCATCAACTAATAGATGAATTGGAGAAGATGTTTGACATAAAGGGACAGCTTCAACCAAGGAATAAGTGGGAAATTGTTTTCACTGATGATGAAGGGGACATGATGCTTGTGGGTGATGATCCATGGCCGGAATTCTGTAACATGGTGAGAAGAATCTTCATTTGTTCCAGCCAGGATGTGCACAAAATGAGATCAGGGAGCAAACTGCCTATCTCTTCAATAGAAGAAGAGATTGTAATAAGCTCAGCCACATCTGAGACCTGA 2025 0.4316 MMMNRGGEEDELYEQLWKACAGPHVEVPRAEQRVFYFPQGHMEQLEVSTNQELNQRIPLFKLPTKILCRVVNVHLRAEQETDEVYAQITLVPESNQTDPTSPDPCPAELPRQEIHSFCKVLTASDTSTHGGLSVLRKHANECLPTLDMSQSTPAQELVAKDLHGYEWRFKHIFRGQPRRHLFTTGWSTFLTSKRLVAGDTFVFLRGTNGELRVGMRRLASLQSSMPSSVISSQSMHLGVLATASHAVATKTLFVVYYKPRMSQFIVSVNKYLEAINQKCSVGMRFKMRSEGDDSPETDKRFSGTIVGLEDISPHWVNSTWRSLKVQWDEHASIPRPDRVSPWEMEPLMASVPTSSVQPAVVKNKRPRPPSEVPDLEDTTFGASTCWDAGLTQSDVTQLSVMAEHKRSDSTHMWYHKLIDNSKSSSNGISRNQTEGSWLSSPHSSVPSHLCQDTTDDSKSASVSAWPISKTHSERLNNDHLLDQVDKENKVEAATSCRLFGIELLDHARNSPAVEKASLHAGNASGITSDADHKSDISKDSKERKQEQLQVSTKDTQSKQSCSRSCTKVQMQGVAVGRAVDLTTLDGYHQLIDELEKMFDIKGQLQPRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVHKMRSGSKLPISSIEEEIVISSATSET* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01737 674 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 651 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops8g01737 674 Pfam Auxin response factor 243 324 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops8g01737 674 SUPERFAMILY DNA-binding pseudobarrel domain 108 246 IPR015300 -
Rops8g01737 674 CDD B3_DNA 115 217 IPR003340 GO:0003677
Rops8g01737 674 MobiDBLite consensus disorder prediction 531 549 - -
Rops8g01737 674 Pfam AUX/IAA family 609 647 IPR033389 -
Rops8g01737 674 Pfam AUX/IAA family 542 599 IPR033389 -
Rops8g01737 674 MobiDBLite consensus disorder prediction 423 463 - -
Rops8g01737 674 Gene3D - 558 651 - -
Rops8g01737 674 Gene3D - 114 218 IPR015300 -
Rops8g01737 674 SMART B3_2 117 219 IPR003340 GO:0003677
Rops8g01737 674 Gene3D - 278 351 - -
Rops8g01737 674 MobiDBLite consensus disorder prediction 515 563 - -
Rops8g01737 674 SUPERFAMILY CAD & PB1 domains 566 639 - -
Rops8g01737 674 FunFam Auxin response factor 115 219 - -
Rops8g01737 674 MobiDBLite consensus disorder prediction 354 376 - -
Rops8g01737 674 ProSiteProfiles PB1 domain profile. 563 644 IPR000270 GO:0005515
Rops8g01737 674 FunFam Auxin response factor 558 651 - -
Rops8g01737 674 FunFam Auxin response factor 278 351 - -
Rops8g01737 674 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Rops8g01737 674 Pfam B3 DNA binding domain 117 217 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01737 Rops-Chr8 38964842 38969817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01737 2 656 B3 DNA Binding Superfamily AT4G23980 58.434 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops8g01737 AUX_IAA 1.8e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01737 K14486 - gmx:100799088 1042.72