Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01736 ATGGCATCGTTAGGATCTTCGTTCTGGTGCTATAGATGCAACCGAATCGTTAGGGTTCCAATCGTAGCGGAACAAGACCCTTTGTTACTCTGCCCCGATTGCGCTTCCGGTTTTCTCGAAGAAATCAGAAACCCTATCCAATCTCACTTTCAAGTCGCCGACGACACCGACCACGGCGGCAGCCCAACAGTCCGCCGTCGAGGCGGCGGTGACCGATCACCTTTTAATCCTGTAATCGTCCTCCGTGGAGGGAACGACGTCGTCTCGACAGAAAGGCGTAACTTCGAACTCTATTACAACGACGCCGTTTCGGGCTCCGGTCTTCGTCCGTTACCCGCAAGCGTGACGGAGTTTCTTATGGGCTCAGGTTTCGACCATCTTCTGGACCAGCTGGCCCAACTGGAAGGAACCGCGGCCCAATTAGATCGGCCCACGCCACCAGCCGCGTCGAAAGCCGCGATCGAATCGATGCCGATCGTGAAAATAATCGCCGATCACGTTAGCGCTGAATCGCAATGCGCCGTTTGTATGGAACCTTTTGAGCTTCATTGCGACGCTCGTGAAATGCCGTGCGGCCACGTGTACCATTCCGATTGTATCGTTCCGTGGCTCTCTGTTCGTAACTCGTGCCCGGTTTGCCGCCACGAGGTCTCCCCCGCCGCCGGAAGTACAGGCGGAGACGCCGTGGGACTCACCATATGGAGGCTTCCCGGTGGAGGCTTTGCTGTGGGGAGGTTCATTGGTGGAAGGGAACTTCCCGTTGTGTACACTGAAATGGATGGTGCATTTAACGGTGCTGTTGCTCATGGTGCTGTTTCTAGAAGGATCTCTTGGGATTCCAATGTTACAAGATCGAGAGAGAATAGGGGGTTTGCATTTCGTGGTGCTTTGCGTAATCTGTTTTCGTATTTTCGAAGTTCTTTCTCTCGTTCTTCTTCTGCTAATGCAAGGTCTCGTTCTGCCACTACTGTTCTTTCTAGATTCTCAAGGAGGAGAAGCTAA 1002 0.5329 MASLGSSFWCYRCNRIVRVPIVAEQDPLLLCPDCASGFLEEIRNPIQSHFQVADDTDHGGSPTVRRRGGGDRSPFNPVIVLRGGNDVVSTERRNFELYYNDAVSGSGLRPLPASVTEFLMGSGFDHLLDQLAQLEGTAAQLDRPTPPAASKAAIESMPIVKIIADHVSAESQCAVCMEPFELHCDAREMPCGHVYHSDCIVPWLSVRNSCPVCRHEVSPAAGSTGGDAVGLTIWRLPGGGFAVGRFIGGRELPVVYTEMDGAFNGAVAHGAVSRRISWDSNVTRSRENRGFAFRGALRNLFSYFRSSFSRSSSANARSRSATTVLSRFSRRRS* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01736 333 SMART ring_2 173 213 IPR001841 -
Rops8g01736 333 Pfam Protein of unknown function (DUF1117) 229 325 IPR010543 -
Rops8g01736 333 SUPERFAMILY RING/U-box 153 220 - -
Rops8g01736 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 73 217 - -
Rops8g01736 333 Pfam zinc-ribbon 7 42 IPR039525 GO:0061630
Rops8g01736 333 Pfam Ring finger domain 172 214 IPR001841 -
Rops8g01736 333 ProSiteProfiles Zinc finger RING-type profile. 173 214 IPR001841 -
Rops8g01736 333 FunFam E3 ubiquitin-protein ligase RING1-like 135 220 - -
Rops8g01736 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 220 IPR013083 -
Rops8g01736 333 MobiDBLite consensus disorder prediction 52 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01736 Rops-Chr8 38903461 38905051 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01736 110 217 C3H Transcription Factor Family AT5G01980 43.519 1.02e-23 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01736 K11982 - gmx:121172634 381.333