Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01735 ATGCAGAAAGGTCAGATGAAGTTTGATGAGGATCTTGGTCCTGATCGTGAGGACGATTTTCAAACTGATGATGAAGAAAACCAGGCACAAAGGGTATTTGAAAATTTGGATGATGATGATGATACCGAGTCAGATAACTCACCTCCTTCACGAAATATGTCCAACGAGGTTTCCATCAGTCCCTCATGGCCTCAAAGTTATAGGCAATCGATGGACATGTTAACTAGTATAAGTGTGACACCACCGGGACTTACTTGCCTAAGGAGAATTGGTTCAACAGGGAGGAGTGGCTTTCTCTCCACATCATTCAAGAGACCTCAAGAGCAAGATGATTCTTCTTTGAATGTACCTCTTTTTTCCCAGACAAGTTCATCCAAACAAGAGGAGCCTACCTCACATGTGGAATCAGTTGTTCCTAACAGTCCAAAATTTTCTGAGAGTGAATTGCCACAGTCACAGCCACAATGTTCATTTGCACAATCAGTAATTAATGGAACCAATATCTTATGTGGGATAGGACTTCTCACAATTCCATATGCAGTAAAAGAAGGAGGGTGGTTGAGCCTTATATTGCTTCCAATGTTTGCTGTCATGTGTTGTTATACTGGGATTTTATTGAAGAGATGTTTAGAAAGCCATCCTGGAATCAAAGACTACCCAGATATTGGTCAGGCTGCTTTTGGAATTTCTGGTCGCTTGGGGATTTCGATCATTTTGTACCTGGAACTATTTGCTTCTTGTGTTGAGTATATAATACTAATCAGTGATAACCTTGCATCATTGTTTCCCAACACCCACATGAGATTTGCTGGGACTGATTTTAGTACTCATCAAACTTTTGCCATCACAGCAGCTGTTCTTGTTCTACCAACAGTTTGGCTGCGAAATATGAGCCTGCTTTCTTATATTTCAGTTGGAGGAATATTTGCATCAATAATTGTAGCACTTTGCTTGTTTTGGGTTGGGGCGATTGATCAAATTGGATTTAAGCCAGGAGGAAAAGTTTTAGACCTGAATAACCTATCTGTCTCAGTTGGTCTTTATGGTTTTGGCTTTGCTGGCCATACAGTTTTTCCAAACATCTACTCTTCCATGAAGGAACCGTCGAAATTCCCATCAGTTCTAATTGTCAGCTTTGCCTTTTGTCTTGTTATGTACATAAGTGTTGGAGCATTTGGCTATTTAAAGTTTGGTGACTCGGTTGAATCTCAGTTTACCTTAAACATGCCCAAAGAATTATATGCATCCGAGGTTGCAACTTGGACAACTGTTGTGTCCCCACTGGCGAAATATGCCTTAACGTTATTGCCTATTGCATTGTGCATAGAGGAACTCACCCCCTCTCCTAGGCTAAGATGTTATGCTATGTCTGTACTTATCAGAACAGTTTTAGTGATTTTAAGTTTAGTTGTGGCCCTCAGTGTTCCATATTTTGGTTCTGTGATGGCACTAATTGGTTCTATGATGTCAATGCTAGTTGCACTTATTTATCCTTGTGCATGTTATCTCAAGCTACATAGTGGCAGATTATCAAAAATGGAGATAACAAATTGCGTTTTGATTATTTGTGTGGGAGTGGTATGCGCTTCCATTGGAACTTATTCAGCTATTTCAAGAATAGCTGGCGAGGGGGACTAA 1638 0.4029 MQKGQMKFDEDLGPDREDDFQTDDEENQAQRVFENLDDDDDTESDNSPPSRNMSNEVSISPSWPQSYRQSMDMLTSISVTPPGLTCLRRIGSTGRSGFLSTSFKRPQEQDDSSLNVPLFSQTSSSKQEEPTSHVESVVPNSPKFSESELPQSQPQCSFAQSVINGTNILCGIGLLTIPYAVKEGGWLSLILLPMFAVMCCYTGILLKRCLESHPGIKDYPDIGQAAFGISGRLGISIILYLELFASCVEYIILISDNLASLFPNTHMRFAGTDFSTHQTFAITAAVLVLPTVWLRNMSLLSYISVGGIFASIIVALCLFWVGAIDQIGFKPGGKVLDLNNLSVSVGLYGFGFAGHTVFPNIYSSMKEPSKFPSVLIVSFAFCLVMYISVGAFGYLKFGDSVESQFTLNMPKELYASEVATWTTVVSPLAKYALTLLPIALCIEELTPSPRLRCYAMSVLIRTVLVILSLVVALSVPYFGSVMALIGSMMSMLVALIYPCACYLKLHSGRLSKMEITNCVLIICVGVVCASIGTYSAISRIAGEGD* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01735 545 FunFam Amino acid transporter AVT1A 154 543 - -
Rops8g01735 545 MobiDBLite consensus disorder prediction 97 147 - -
Rops8g01735 545 PANTHER AMINO ACID TRANSPORTER 147 534 - -
Rops8g01735 545 MobiDBLite consensus disorder prediction 1 64 - -
Rops8g01735 545 MobiDBLite consensus disorder prediction 47 64 - -
Rops8g01735 545 Pfam Transmembrane amino acid transporter protein 156 537 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01735 Rops-Chr8 38875198 38880637 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01735 6 543 Amino Acid or Auxin Permease AAAP Family AT5G02180 52.338 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01735 K15015 - cave:132161847 660.988