Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01729 ATGGTTGAGTCAGCCATGTCAAAGACAATGATGGAGGAAGTTATGGCTAATTGGTCAGATGGGTCAGAGGATGATGACCTTGTGAGAGAGCTTTTAGATGATGTGTCTCCTCTTCTTATGCTGCCAGAGGAGGCAAATGAACCAAACACAAGAGCTTCTTCAAGAGACCAAGCCTTTAATAAGCTCATTTCAAACATTTACTCAGGACCTACCATCTCAGATATTGAAAATGCTTTATCAGTTACCAACCAAAGAGAGCACTTCCAACAACTCTCACCAGCCAGAGTTTCCATATTGGAAAAGAGTTTGAGTAAGATTGAGAATAAGTACACCTTGAAAATCAAATGCTTTGGAAATGGGATGGGTGATGATGGATACAAGTGGAGGAAGTATGGTCAGAAATCCATTAAGAATAGCCCAAATCCTAGGAGTTACTATCGGTGCACCAACCCAAGGTGCAGTGCCAAGAAGCAAGTTGAGAGATCCAATGAGGACCCTGACACTCTTATCATAACCTATGAAGGGCTCCACCTTCACTTTGCTTACCCATATTTTCTTGTGGGTCAACCACAGCAATCTCATTCCCAACCACCAATCAAGAAGTCCAAGCCCACCTCTTCCCAAAGCCAAGCCCAAGACCAAGATCATAAAGCCCATCATGTTCATGTGGGCCAGCATACACAAGAAGCCCAGGAAGCTCAAGACAGTGCTGCTTTGGGCCTGATATCATCCACTTTATTGGACTCTCCACAAGACATTGCCCAAGAAAATTTGGGCTCACAAGGGTTGCTTGAAGACATGGTGCCTTTTATGGTTAGGAACCCCACAAACAATGTCAATAGTGCTTACTCAAATTTTTCTTGTTCTTCACACTCTTCTCCTCCGACATCACCTCCTCTGTGGAATTCTGGTTATTCCACCTCTTGTTATACCATTGGCTTAAATTCCAGCACTTAG 957 0.4357 MVESAMSKTMMEEVMANWSDGSEDDDLVRELLDDVSPLLMLPEEANEPNTRASSRDQAFNKLISNIYSGPTISDIENALSVTNQREHFQQLSPARVSILEKSLSKIENKYTLKIKCFGNGMGDDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSNEDPDTLIITYEGLHLHFAYPYFLVGQPQQSHSQPPIKKSKPTSSQSQAQDQDHKAHHVHVGQHTQEAQEAQDSAALGLISSTLLDSPQDIAQENLGSQGLLEDMVPFMVRNPTNNVNSAYSNFSCSSHSSPPTSPPLWNSGYSTSCYTIGLNSST* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01729 318 SUPERFAMILY WRKY DNA-binding domain 120 179 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops8g01729 318 FunFam WRKY transcription factor 108 183 - -
Rops8g01729 318 Pfam WRKY DNA -binding domain 123 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g01729 318 ProSiteProfiles WRKY domain profile. 117 182 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g01729 318 SMART WRKY_cls 122 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g01729 318 Gene3D WRKY domain 118 175 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops8g01729 318 MobiDBLite consensus disorder prediction 191 212 - -
Rops8g01729 318 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 86 217 IPR044810 GO:0003700
Rops8g01729 318 MobiDBLite consensus disorder prediction 191 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01729 Rops-Chr8 38757561 38759975 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01729 11 278 WRKY Transcription Factor Family AT5G43290 42.466 1.14e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops8g01729 WRKY 6.3e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01729 - - gmx:100810459 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01729 8 38757561 38759975 Rops8g01729 8 38757561 38759975 ECH