Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01723 ATGGATCCAAGACTTCGTGGGTTTAGTGGTTCCACAAATCAAATCCGGTTGGGGAATCAATCTTTGCCAATTCTGCAGAATCAGAGATTTGAAAATGGTTTCTTTGATCAAAGTAGGGAATTTGGTTACCTTCAATCCAATCTAATACCAGCTGATACACCCTCATCTTCGGTTTTGACACATGAGGAACCTTCTCCGGAGGACTGTGAATTTTCTGATGCTGTTTTGAGTTACATCAGTCAAATCCTTATGGAAGAAGACATGGAAGACAAGACATGCATGCTTCAAGATTCTTTGGATCTTCAAATTGCTGAGAAATCATTCTATGAAGTGATAGGTGAAAAATACCCAGCTTTGCCATTAGGAAATTCAAGACTTATTCATCAAAATGATGGGGTTGGAGATAATAACTTCTTTGAAAATTATGGTGATGATAATGGTGATCTGAGTAGCATTTTTACCAACAATTCTTCTCGTCGAAACTCGGGGGAAGTTCCTAACCAAAATTTTCAAGGCAATAGCATTTCACAGTCATCTTATAGCTCTTGTAATAGTGTAATAAGTAGTGTGGAAGGGCATCTGGACTCACCAAACAGTATTCTCCAGGTTCCTGATCTGAACAGTGAGAGTCAATCCATTTTGCAATTTCAAAAGGGTGTTGAGGAGGCTAGTAAGTTTCTTCCAAGTGGAAATGGGCTCTTTACTAATTTGGATGTGGCTAATTTTTCAATACTAGAGCCTAAAGTGGGGACTGATAAATTGTCAGTTAAGGTGGAGAATGATGAGGGGAAGTCTTTTCTTGCTGGATCCAAGGTAAGGAAGCAACCTCACAGGGAAGAGGGGGATGTAGAAGAAAATAGAAGCAGCAAGCTTGCGGCAACTTTCACAGAACCTACATTACGGTCAAATATGATTGATATAATCCTGCTTCATAGTTTAGGAGATGGTAAGAATCATTTTATGGCTCGTCGCGAGGCTTTGCAAATTAAGAAGGAGAAGATAATGCTGCCAAATGGTAAATCGAAAGCTTCCAATAGTAGGAAGGGACGAGGTAAGAAACCAAATGGGAAAAAGGAAGTGGTTGATTTGAGAACACTTCTGGTTCTTTGTGCACAAGCTGTTGCAGCAGATGACTATAAAAGTGCACATGAGTTGCTAAAGCAGATCAGGCAGCACTCGAGCCCTTTCGGGGATGGAAATGAGAGGTTGGCTCATATCTTTGCTGATGGCCTTGAGGCACGCTTGGCTGGTACTGGAAGCCAAATTTATAAAGGACTTATTAGTAAAAGAACTTCAGCTGCTGATTTTCTGAAAGCTTATTATCTATACCTCGCTGCTTGCCCTTTTAGGAAGATGACTAATTTTATCTCAAATGTCACAATAAGGAGATCTGCAGAAAAATCAATGAGGATCCATGTTATAGATTTTGGTATCCTTTATGGTTTTCAGTGGCCCACTTTAATACAAAGACTTTCATTAAGTTCTGGGGGATTACCACCTAAACTTCGGATTACAGGAATAGACTTCCCACAACCTGGTTTCAGGCCTGCGGAAAGAATTCTAGAAACTGGAAGCCGCCTGGCAGCATATGCTGAGTCTTTTAATGTGCCATTTGAGTATAATGCCATTGCTAAAAAATGGGAAACAATTCAACTTGAGGAACTAAAGATTGAAAGGGATGAGTACCTTGTTGTTACTTGCTTTTATCGTGGTAAAACCTTGCTTGATGAATCTGTGGTAGTGGACAGTCCAAGGAACAAATTCCTCAGTTTGGTAAGGAAGATCAACCCGGATTTATTCATTCATGGTGTTATTAATGGGGCCTTTAATGCCCCTTTCTTTGTTACTCGATTCAGGGAGGCACTGTTTCACTTCTCTTCACTTTTTGACATGCTTGAAACTATTGTGCCCCGTGAAGACTGGGAGAGGATGCTAATTGAGAAAGACATATTTGGGAGGGAAGCATTGAATGTTATAGCTTGTGAAGGCTGTGAGAGGGTAGAGAGGCCAGAGACCTATAGACAGTGGCAAGTGCGTATCCTACGGGCTGGGTTTCTGCAACAACCTTTTCATCGTGAGTTAATAGGGAGGGCAATGGAGAAAGTAAGGTGTAGTTATCACAAGGATTTTGTAATTGATGAAGATGGTCAGTGGTTGTTGCAAGGTTGGAAGGGGCGAATCGTTTATGCCCTTTCTTGTTGGAAACCTGCATGA 2214 0.4092 MDPRLRGFSGSTNQIRLGNQSLPILQNQRFENGFFDQSREFGYLQSNLIPADTPSSSVLTHEEPSPEDCEFSDAVLSYISQILMEEDMEDKTCMLQDSLDLQIAEKSFYEVIGEKYPALPLGNSRLIHQNDGVGDNNFFENYGDDNGDLSSIFTNNSSRRNSGEVPNQNFQGNSISQSSYSSCNSVISSVEGHLDSPNSILQVPDLNSESQSILQFQKGVEEASKFLPSGNGLFTNLDVANFSILEPKVGTDKLSVKVENDEGKSFLAGSKVRKQPHREEGDVEENRSSKLAATFTEPTLRSNMIDIILLHSLGDGKNHFMARREALQIKKEKIMLPNGKSKASNSRKGRGKKPNGKKEVVDLRTLLVLCAQAVAADDYKSAHELLKQIRQHSSPFGDGNERLAHIFADGLEARLAGTGSQIYKGLISKRTSAADFLKAYYLYLAACPFRKMTNFISNVTIRRSAEKSMRIHVIDFGILYGFQWPTLIQRLSLSSGGLPPKLRITGIDFPQPGFRPAERILETGSRLAAYAESFNVPFEYNAIAKKWETIQLEELKIERDEYLVVTCFYRGKTLLDESVVVDSPRNKFLSLVRKINPDLFIHGVINGAFNAPFFVTRFREALFHFSSLFDMLETIVPREDWERMLIEKDIFGREALNVIACEGCERVERPETYRQWQVRILRAGFLQQPFHRELIGRAMEKVRCSYHKDFVIDEDGQWLLQGWKGRIVYALSCWKPA* 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01723 737 ProSiteProfiles GRAS family profile. 354 735 IPR005202 -
Rops8g01723 737 Pfam GRAS domain family 363 735 IPR005202 -
Rops8g01723 737 MobiDBLite consensus disorder prediction 150 176 - -
Rops8g01723 737 MobiDBLite consensus disorder prediction 267 288 - -
Rops8g01723 737 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 286 728 IPR005202 -
Rops8g01723 737 MobiDBLite consensus disorder prediction 336 356 - -
Rops8g01723 737 MobiDBLite consensus disorder prediction 267 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01723 Rops-Chr8 38509104 38512600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01723 67 736 GRAS Transcription Factor Family AT2G37650 53.381 0.0 671
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops8g01723 GRAS 1.8e-107 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01723 - - ccaj:109816616 1196.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01723 8 38509104 38512600 Rops8g01723 8 38509104 38512600 ECH