Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01719 ATGTTGGTGTCGTTGTTAGAGGATTATCAACCTCGAGCTGCAATTTCTTATAGTAAGCAACCTGTTCATGTAAACATTCAACAAAGTCATGCTGCTGATCAGGAGAGAATGCTACAACCATCAGTTGCTTCTTCCATGATCCACCGTTTTAGGTTGACTGAGTACAGTGCAACTAAAAATCAAAAGTATCTTCCTGCAACCTTCGTAGACTATGGTCTTAACTTAAAGCTGAAGACTGCAACTCTAAGAGTAAGAGGAGGAAGACAGTGGAAATGTGGCATTTACCGTAGCAGAAGAGAAAATGAAGCTAGATTGTCTACAGGATGGTTGGATTTTATATCTGATGTTGGCTTGAAGGCAGGAGACATTGTAGAATTTCAATCTATTGATCCATCAAAGAATGATATTTTAGTTAATTTAAGAAGTAATTGA 432 0.3773 MLVSLLEDYQPRAAISYSKQPVHVNIQQSHAADQERMLQPSVASSMIHRFRLTEYSATKNQKYLPATFVDYGLNLKLKTATLRVRGGRQWKCGIYRSRRENEARLSTGWLDFISDVGLKAGDIVEFQSIDPSKNDILVNLRSN* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01719 143 SUPERFAMILY DNA-binding pseudobarrel domain 50 138 IPR015300 -
Rops8g01719 143 Pfam B3 DNA binding domain 53 142 IPR003340 GO:0003677
Rops8g01719 143 Gene3D - 14 142 IPR015300 -
Rops8g01719 143 CDD B3_DNA 43 130 IPR003340 GO:0003677
Rops8g01719 143 ProSiteProfiles B3 DNA-binding domain profile. 47 143 IPR003340 GO:0003677
Rops8g01719 143 SMART B3_2 47 142 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01719 Rops-Chr8 38471338 38472063 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01719 52 137 REM Transcription Factor Family AT1G26680 29.885 6.27e-06 42.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops8g01719 B3 1.1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01719 - K09287 lja:Lj1g3v3466090.1 46.2098