Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01718 ATGGCTAAAATTGTTCTTCTCTGCATTGCATCATTGGTCTCTCTTTTTGTTGCAGCCAATGCTAGAATCCCTGGAGTTTATAGCGGTGGCCCATGGCAAACTGCTCATGCCACTTTCTATGGTGGCAGTGATGCCTCTGGAACAATGGGAGGCATCAGATTCACAATCAACGGCTTTCGTTACTTCAACCTGGTTTTGATCACCAACGTCGCGGGTGCAGGGGATCTCGTGCGCGTGAGTGTGAAAGGAAGCAACACTGCATGGATAAGCATGAGCCGTAACTGGGGGCAAAATTGGCAATCCAATGCAGTTTTGGTGGGCCAGGCCCTCTCTTTTAGAGTCACCGGCAGTGACCGACGAACCTCAACCTCATTGAACGTGGCACCACCTAATTGGCAGTTCGGACAAACCTTCATGGGAAAGAATTTCCGTATCTAA 438 0.4932 MAKIVLLCIASLVSLFVAANARIPGVYSGGPWQTAHATFYGGSDASGTMGGIRFTINGFRYFNLVLITNVAGAGDLVRVSVKGSNTAWISMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSLNVAPPNWQFGQTFMGKNFRI* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01718 145 Gene3D - 51 143 IPR036749 -
Rops8g01718 145 PANTHER EXPANSIN-A15 16 51 IPR002963 GO:0009664
Rops8g01718 145 SUPERFAMILY PHL pollen allergen 50 139 IPR036749 -
Rops8g01718 145 Pfam Expansin C-terminal domain 52 129 IPR007117 -
Rops8g01718 145 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 61 140 IPR007117 -
Rops8g01718 145 FunFam Expansin 51 143 - -
Rops8g01718 145 PRINTS Expansin signature 50 62 IPR002963 GO:0009664
Rops8g01718 145 PRINTS Expansin signature 97 118 IPR002963 GO:0009664
Rops8g01718 145 PRINTS Expansin signature 62 83 IPR002963 GO:0009664
Rops8g01718 145 PRINTS Expansin signature 126 142 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01718 Rops-Chr8 38396209 38398771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01718 4 51 Expansin Gene Family AT2G39700 68.750 4.91e-15 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01718 - - gmx:547955 189.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01718 8 38396209 38398771 Rops8g01718 8 38396209 38398771 ECH
Rops8g01718 8 38396209 38398771 Rops9g00955 9 15672926 15674911 ECH