Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01715 ATGAAGGATAGGCAACGGTGGAGAGCGGAAGAGGATGCTTTACTACGTGCTTATGTCAAACAATATGGTCCTAGAGAATGGAATCTTGTGTCTCAGCGCTTGAACACACCTCTTAATAGGGATGCCAAGTCATGCTTAGAAAGGTGGAAGAACTACCTCAAGCCTGGTATTAAGAAAGGATCTCTTACTGAGGAAGAACAGCGCCTTGTCATCAACCTTCAAGCAACACACGGTAACAAATGGAAGAAAATCGCAGCCCAAGTCCCCGGTCGAACTGCTAAGAGATTAGGTAAGTGGTGGGAAGTATTCAAAGAGAAACAACAAAGAGAATCAAAGGGGATTAATAGAACCATCGACCCGATTAACGATAGCAAGTACGAGCATATACTAGAGAGTTTTGCTGAGAAACTAGTGAAAGAACGCCCTTCACCATCATTTGTCATGGCTGCTTCTAACAGTTCATATCTGCATACTGATGCGCCAGCTTTGCTTCCTTCTTGGCTGTCCAATTCTAATAACACTGCACCTGTTAGGCCACCTTCCCCTTCAGTGACACTAAGTCTCTCTCCCTCAACAGTGGCAGCACCTCCTCCATGGTTGCAACCGGTGAGAGGACCGGAGAATGCTCCTCTTGTGTTGGGGAATGTAACTCCACATGGAGCTGTTCTATCTTTTGGTGAAAACATGGTCATGTCTGAGTTGGTGGAGTGCTGTAAAGAGTTGGAGGAAGTGCATCATGCCTTGGCAGCACATAAGAAGGAGGCGGCATGGCGGTTAAGTCGGGTGGAGTTACAGTTGGAGTCTGAGAAAGCATGTAGAAGGAGGGAGAAAATAGAAGAAATTGAAGCAAAGATCAAAGCTCTCAGGGAGGAGCAGACAGCTGCATTGGATAGAATTGAAGCAGAATACAAGGAACAATTGGCAGGTTTGAGAAGAGATGCAGAAACTAAGGAGCAGAAGTTGGCTGAACAATGGGCTGCAAAACATGTGCGCCTTACCAAGTTTCTAGAGCAAGTAGGATGCAGATCAAGGCTTTCTGAACCAAATGGAAGATAG 1056 0.4583 MKDRQRWRAEEDALLRAYVKQYGPREWNLVSQRLNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVINLQATHGNKWKKIAAQVPGRTAKRLGKWWEVFKEKQQRESKGINRTIDPINDSKYEHILESFAEKLVKERPSPSFVMAASNSSYLHTDAPALLPSWLSNSNNTAPVRPPSPSVTLSLSPSTVAAPPPWLQPVRGPENAPLVLGNVTPHGAVLSFGENMVMSELVECCKELEEVHHALAAHKKEAAWRLSRVELQLESEKACRRREKIEEIEAKIKALREEQTAALDRIEAEYKEQLAGLRRDAETKEQKLAEQWAAKHVRLTKFLEQVGCRSRLSEPNGR* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01715 351 Coils Coil 278 298 - -
Rops8g01715 351 Gene3D - 4 58 - -
Rops8g01715 351 Gene3D - 62 123 - -
Rops8g01715 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 108 IPR017930 -
Rops8g01715 351 SMART sant 3 55 IPR001005 -
Rops8g01715 351 SMART sant 58 106 IPR001005 -
Rops8g01715 351 CDD SANT 6 53 IPR001005 -
Rops8g01715 351 FunFam MYB-related transcription factor 4 58 - -
Rops8g01715 351 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Rops8g01715 351 Coils Coil 300 320 - -
Rops8g01715 351 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 346 - -
Rops8g01715 351 CDD SANT 63 104 IPR001005 -
Rops8g01715 351 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Rops8g01715 351 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Rops8g01715 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Rops8g01715 351 Pfam Myb-like DNA-binding domain 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01715 Rops-Chr8 38341011 38344114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01715 1 342 MYB Transcription Factor Family AT2G37630 66.120 3.59e-158 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops8g01715 Myb_DNA-bind_6 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01715 K09422 - gmx:100819082 605.52