Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01712 ATGGCTGAGGTTAAATCAGAGGAGTGTTGTTTGGAGAATAAGCAATCTACTGCTGCTTCTTTCTCCTCTGTATCTGAAGGCAGTGGTAGTGCAATTCACAAGTCTCCAGGGATATGTAGTCCGGCATCGACGTCGCCCTCTCATCGGAGGACCACTGGCCCTATAAGGCGTGCTAAGGGAGGTTGGACAGCAGCAGAGGATGAGACATTAAGGAATGCTGTTGCAGCTTTTAAGGGAAAGAGTTGGAAGAAAATAGCTGAGTATTTTCCTGATAGATCTGAAGTTCAGTGCCTACATAGATGGCAAAAAGTTCTTAATCCAGAACTTGTTAAAGGACCATGGACACAGGAGGAGGATGATAAAATTATTGAACTGGTGTCAAAATATGGGCCTACAAAATGGTCTTTGATAGCCAAGTCTTTGCCTGGTCGAATAGGGAAACAGTGTCGAGAGCGGTGGCACAATCATCTTAATCCTGAAATTAAGAAGGATGCCTGGACTTTGGAGGAGGAATTAGCCCTAATGAATGCTCATCGTATACATGGGAACAAATGGGCTGAAATAGCTAAGGTCCTTCCTGGAAGGACTGATAATGCAATAAAGAACCACTGGAATAGTTCTTTGAAGAAAAAGTTGGATTTTTATTTAGCAACAGGAAGGCTTCCACCAATTCCAAAGAACAGTCCGCAAGTTGCTGCCAAAGATACAATTAGACGTTCTGCTACTAAAACAATACTTGGTTGTTCAAATAAAGAATTAAATGGAGCTGTTGAAACATCTTCTGAAACTACAGCCATTAGTAAGTTGGATGACAGTGGCAAGAATCAGTTTGAGTCCTCAGGAACAGTTAGAGAGGTTGGTGATTCTTCAAGTGTTCCTGCAAATGAATCTGCTGATTCTGACTGTGTAGAATGCAAGCCTGGATCATCCAACGTCGATCTGAGCTGTGGCAACTCAGAACAAGTATCAAGAGCTAATTTTGGACCAACATATTGGCCAAAATCTGATAATTCTGGACACAATGGAAACCCAACAATTGAGCATTGTTCAAACAATGGTAAAATTATCAGTAGCAGGTTAATCAGAACATCTTCTTCGCATGAAAGTCCAACCTGTGGTTCTTTGTGTTATGAGCCACCACAGTTAGATGGTTCCGTTCCTTTAGACTCTCTTTATTTAAATATTGTTTGCCTGCAGAATGAGTACTATTCTAATCCAATGTCGTCACCTATTGGTTTCTTCACTCCACCTCGTGTGAAGGGTAGTGAATTATGCACAGAGTCACCTGAATCAATATTGAAAAAGGCTGCTAATACCTTTCCAAATACTCCTTCCATATTGAGGAGGAAAAGAACTAGTGTCCAAACACACACCACTCCTAGTAAAGTTTTGAAAGTAGATAATAATTCCCATACTTCTAATGAACCAGATAGAACCACGGATAATCCTGGTTCTGAAGTTAAGACGTTATCTGAGAATCCAGCAAGCCATGGCAATGGGAGTGACATCCCCAACAATAAGGCAATCAATGCAACTCCACCATACAGGTTAAGATCCAAGCGAACAGCAATTGTGAAGTCTGTAGAGAAACAACTTGAGTTTGTGTTTGACAAAGAGAAGGATGATGACAATAACAACACAACAGAAAAATCTCTGAAGAGGAGCAATTTGATGATGAAGAATGTCAGCAGGAAACAAAATGGGCAGTGA 1710 0.4105 MAEVKSEECCLENKQSTAASFSSVSEGSGSAIHKSPGICSPASTSPSHRRTTGPIRRAKGGWTAAEDETLRNAVAAFKGKSWKKIAEYFPDRSEVQCLHRWQKVLNPELVKGPWTQEEDDKIIELVSKYGPTKWSLIAKSLPGRIGKQCRERWHNHLNPEIKKDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKLDFYLATGRLPPIPKNSPQVAAKDTIRRSATKTILGCSNKELNGAVETSSETTAISKLDDSGKNQFESSGTVREVGDSSSVPANESADSDCVECKPGSSNVDLSCGNSEQVSRANFGPTYWPKSDNSGHNGNPTIEHCSNNGKIISSRLIRTSSSHESPTCGSLCYEPPQLDGSVPLDSLYLNIVCLQNEYYSNPMSSPIGFFTPPRVKGSELCTESPESILKKAANTFPNTPSILRRKRTSVQTHTTPSKVLKVDNNSHTSNEPDRTTDNPGSEVKTLSENPASHGNGSDIPNNKAINATPPYRLRSKRTAIVKSVEKQLEFVFDKEKDDDNNNTTEKSLKRSNLMMKNVSRKQNGQ* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01712 569 Gene3D - 164 235 - -
Rops8g01712 569 ProSiteProfiles Myb-like domain profile. 106 157 IPR001005 -
Rops8g01712 569 PANTHER MYB PROTEIN-RELATED 59 130 - -
Rops8g01712 569 Gene3D - 58 110 - -
Rops8g01712 569 MobiDBLite consensus disorder prediction 450 514 - -
Rops8g01712 569 SUPERFAMILY Homeodomain-like 108 204 IPR009057 -
Rops8g01712 569 CDD SANT 113 157 IPR001005 -
Rops8g01712 569 MobiDBLite consensus disorder prediction 11 30 - -
Rops8g01712 569 MobiDBLite consensus disorder prediction 550 569 - -
Rops8g01712 569 SUPERFAMILY Homeodomain-like 60 115 IPR009057 -
Rops8g01712 569 MobiDBLite consensus disorder prediction 327 349 - -
Rops8g01712 569 CDD SANT 62 105 IPR001005 -
Rops8g01712 569 MobiDBLite consensus disorder prediction 257 304 - -
Rops8g01712 569 Gene3D - 111 162 - -
Rops8g01712 569 ProSiteProfiles Myb-like domain profile. 158 208 IPR001005 -
Rops8g01712 569 MobiDBLite consensus disorder prediction 257 297 - -
Rops8g01712 569 FunFam Transcriptional activator Myb isoform A 58 110 - -
Rops8g01712 569 ProSiteProfiles Myb-like domain profile. 54 105 IPR001005 -
Rops8g01712 569 MobiDBLite consensus disorder prediction 37 51 - -
Rops8g01712 569 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 162 212 IPR017930 -
Rops8g01712 569 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 105 IPR017930 -
Rops8g01712 569 FunFam Transcriptional activator Myb isoform A 111 163 - -
Rops8g01712 569 Pfam Myb-like DNA-binding domain 59 105 IPR001005 -
Rops8g01712 569 Pfam Myb-like DNA-binding domain 111 157 IPR001005 -
Rops8g01712 569 Pfam Myb-like DNA-binding domain 163 206 IPR001005 -
Rops8g01712 569 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 161 IPR017930 -
Rops8g01712 569 FunFam Transcription factor MYB3R-2 164 230 - -
Rops8g01712 569 MobiDBLite consensus disorder prediction 536 569 - -
Rops8g01712 569 SMART sant 110 159 IPR001005 -
Rops8g01712 569 SMART sant 58 107 IPR001005 -
Rops8g01712 569 SMART sant 162 210 IPR001005 -
Rops8g01712 569 MobiDBLite consensus disorder prediction 1 55 - -
Rops8g01712 569 MobiDBLite consensus disorder prediction 450 508 - -
Rops8g01712 569 CDD SANT 165 208 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01712 Rops-Chr8 38210775 38219722 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01712 2 552 MYB Transcription Factor Family AT3G09370 48.673 8.37e-158 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops8g01712 Myb_DNA-binding 1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01712 K09422 - gmx:778081 916.761