Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01701 ATGTCTCCAGCTGGTTCATCAAGATGGAGCCCTACAACTGAGCAGCTCATGATCTTGGAGGAACTGTACAGGAGTGGGATTAGAACTCCTAGTGCCTCTCAAATTCAGCAAATAACAACCCACCTTTCTTTCTATGGCAGGGTTGAAGGAAAGAATGTGTTCTATTGGTTTCAGAACCATAAGGCTAGGGATAGACAGAAGCTTAGGAGGAAACTCAACAAGCAACTGCAGCTACAGCAACAACTCCAAGTCCATCATTGCCAACAGAATAAGGATCTCAATAACCATTTTGTTGGTAGCTTTGGTTATCCTCCTGGATCTACTACACCAGAAATTTCCTATTTTAACTCAGCTAGCTTGCTTTTTCAGGGAGGAGGAGCTGCAAACACATCAGAAGGGGCAATCAATTGCAAATGGAATGTGTATAATCCACAAATTTTGATGGAGAAGAAAGAGATGGCATTCTGCAACTATGGTTGTACACTTTTGGATGTTAATCAAGCATCTTCATGTTGCACTAGACCTCTCAAGACTCTTGATCTCTTTCCCCTCTCAACTACCAGAATCAAAGAAGACTGCACCACACCACCCAATAGTAGCTCTATCATTCCATGTTCATCAACCAAATCCCAAAACTCTATGTGA 645 0.4217 MSPAGSSRWSPTTEQLMILEELYRSGIRTPSASQIQQITTHLSFYGRVEGKNVFYWFQNHKARDRQKLRRKLNKQLQLQQQLQVHHCQQNKDLNNHFVGSFGYPPGSTTPEISYFNSASLLFQGGGAANTSEGAINCKWNVYNPQILMEKKEMAFCNYGCTLLDVNQASSCCTRPLKTLDLFPLSTTRIKEDCTTPPNSSSIIPCSSTKSQNSM* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01701 214 ProSiteProfiles 'Homeobox' domain profile. 2 67 IPR001356 GO:0003677
Rops8g01701 214 Pfam Homeodomain 7 66 IPR001356 GO:0003677
Rops8g01701 214 CDD homeodomain 8 67 IPR001356 GO:0003677
Rops8g01701 214 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 2 201 IPR044555 GO:0003700|GO:0099402
Rops8g01701 214 FunFam WUSCHEL-related homeobox 4 6 73 - -
Rops8g01701 214 SUPERFAMILY Homeodomain-like 7 66 IPR009057 -
Rops8g01701 214 SMART HOX_1 4 71 IPR001356 GO:0003677
Rops8g01701 214 MobiDBLite consensus disorder prediction 195 214 - -
Rops8g01701 214 Gene3D - 3 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01701 Rops-Chr8 38030330 38031298 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01701 1 74 Wox Gene Family AT2G28610 82.432 4.71e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Rops8g01701 Homeodomain 1.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01701 - - gmx:102663963 275.404