Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01686 ATGGCAACAGCAACATACCCACCACCGCCACCTTATTACAGACTGTACAAAAATTACTTGCAAGACCCTAAGTCTGCTCCGGAGCCTCCACCCCCAATTGAAGGGACTTACGTTTGTTTTGGAGCCAATTACACTACTAGTGATGTTTTACCAAGCTTGGAAGAACAAGGGGTGCGCCAGCTCTATTCTAAAGGCCCCAATATTGATTTCAAGAAAGAGCTGAGGTCACTTAATGGAGAGTTGCAACTGCATGTTTTGGAGCTTGCTGATATTCTTATTGAGAGACCATCACAGTATGCGAGGAGAGTTGAAGAAATTTCAACCGTGTTCAAAAACATACATCACCTTTTAAATTCACTGCGTCCTCATCAGGCAAGAGCAACATTGATTCACATTTTGGAACTTCAGATACAGCGCCGTAAACAAGCAGTGGAGGACATAAAGAGGAGGAGAGAAGAAGCTCAAAGACTCCTTAACGAGTCCCTGGCAACCCTTGATGGCCATTAA 507 0.4418 MATATYPPPPPYYRLYKNYLQDPKSAPEPPPPIEGTYVCFGANYTTSDVLPSLEEQGVRQLYSKGPNIDFKKELRSLNGELQLHVLELADILIERPSQYARRVEEISTVFKNIHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRLLNESLATLDGH* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01686 168 Coils Coil 130 164 - -
Rops8g01686 168 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7 2 168 IPR009244 GO:0003712|GO:0006357|GO:0016592
Rops8g01686 168 SUPERFAMILY Mediator hinge subcomplex-like 67 159 IPR037212 GO:0016592
Rops8g01686 168 Pfam MED7 protein 4 157 IPR009244 GO:0003712|GO:0006357|GO:0016592
Rops8g01686 168 Gene3D - 60 159 IPR044888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01686 Rops-Chr8 37689401 37693725 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED7 Rops8g01686 Med7 1.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01686 K15148 - gmx:100792250 308.916