Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01680 ATGGCAGAAAGCAAAGGTGTTGGGGTGCTCCTCCAAAACCTAATCCACATTTCCAGCCAAATCTCCCACATTTCCACCTTCAAGTGCGTCATCAAGAAACAATGCCGAGACCTGAGTCGCAGGATCGTCTTCCTCACCCCTCTCTTCCAAGAACTCCAAGACGACGTCGTCTCGAGGGTCCTCGTTCCGTACGAAGCTCTTGTTTCGCTCCAAGAAGCCCTAATCACCGCCAAGGAATTGCTCCACTTCGGTTCCCAAGGAAGCCAGCTTTACATGATACTGGAGAGAGAGCTAATTAAGTTCAAATTCAATGATGTTGCTGCTCGTTTTGAACACGCTATAAGCAATATCTCCTCCTGTGACAAACTTGATATTTCTGAAGAAGTCAAGGAGCAGGTTGCACTAGTGACTGCTCAGTTTAGAAGGGCCAAAGAGCATTTTGATCCACCTGGTCTTGAGCTTTATGAGTGCCTCCTGTCTCTTTATAACAAGAGCTATTATTATGTGGATGCTGAACCTGCTGAACTACGTTTAATCTGTGAAAGGCTACAGTTTATGAACGTGGAAGACATCAAACAAGAGTCACTTGCTCTGCATAAGATGGTTGTGGACAGTGGTGGTGGTTGTTTTGAGAAAAGCATGCAGGGGATTTCAATATTGCTGAACAAAATTGAAGATTTCATGCTGAAGGAATCTGCAAATGTTATTGCATCATCAACTGAGGATTTCCCTCCTCACACTAAAGAGCCAGGCATGAAACCGTGTTTTCATTCACCAGTTATACCAGACGAGTTTCACTGCCCAATATCTCTAGAGCTAATGAAAGATCCTGTTATCATTTCCACAGGACAGACATATGATCGAGCTTGCATAAAGAAATGGCTTGAAGCAGGGCATGGAACATGTCCTAAGACTCGGCAGATTCTTTACAGCCCCATCCTCATACCTAATCATGTTTTATACAGCCTGATATTGAATTGGTGTGAGGCAAATGGAGTGGAACCACCTAAAAGATTAGGAAATTTACGGCTTTGTAAGGCAACATCAGATGGCTCTTCTGAATTAATAGATCTTGATACCCTAATGAGCAAGCTTACATCCAGTGACGTTGAGGATCAGCGATGTGCAGCAGGGGAGCTCCGTCTTCTTGCCAAGCACAACGGCCAAAATCGAATGTTGATTGCTGAAGCTGGTGCTATACCCCTCCTTGTTGATCTCCTCTATGTCCCTGATGCTGCCACCCAAGAGCATGCTGTTACTGCTCTTCTGAACCTGTCTATCAATGATGCTAATAAAGAGTGCATCATGGCTTCTGAAGCTGTACCAGGAATCCTTCATGTGCTAAAAAATGGTAGTATGGAAGCTCGGGCAAATGCAGCCGCCACCTTTTTCTGCCTCTCAGTGCTGGATGAGAACAAAGTGGCAATTGGTGCATCTGGAGCAATCCAGGAACTAGTTACTCTTTTTCGCGAAGGAAGTCAAAGAGGGAAGGTGGATGCTGCAACAGCACTATTCAATCTGTGTCTATATCAAGGGAACAAAGGAAAAGCAATTAGGGCTGGTATTGTGCCCAAGTTGATAGAAATGCTAACAGAACCCGGTGGGGAGATGAGGGATGTGGCATTGGCAATCATGGCTGTAGTAGTTAGCCACCCTGATGGTAAAGCAGCAATTGGATCTATGAATGTTGTGCCCACTTTGGTGGAATTAATCACTAATGGATCTCCTAGGAATAAAGAGAATGCAACTTCAGTGTTGGTGCATCTCTGTAGTGGAAATCCACTACATTTGTCAATTGTCAATTCACTTGGGGTGATCAATCCTCTCTTGGACCTGGCAGAAAACGGTTCAGAAAGGGGCAAGCGGAAAGCTGCCCAGCTTCTTGAGTTGATAGGCATTTAG 1902 0.449 MAESKGVGVLLQNLIHISSQISHISTFKCVIKKQCRDLSRRIVFLTPLFQELQDDVVSRVLVPYEALVSLQEALITAKELLHFGSQGSQLYMILERELIKFKFNDVAARFEHAISNISSCDKLDISEEVKEQVALVTAQFRRAKEHFDPPGLELYECLLSLYNKSYYYVDAEPAELRLICERLQFMNVEDIKQESLALHKMVVDSGGGCFEKSMQGISILLNKIEDFMLKESANVIASSTEDFPPHTKEPGMKPCFHSPVIPDEFHCPISLELMKDPVIISTGQTYDRACIKKWLEAGHGTCPKTRQILYSPILIPNHVLYSLILNWCEANGVEPPKRLGNLRLCKATSDGSSELIDLDTLMSKLTSSDVEDQRCAAGELRLLAKHNGQNRMLIAEAGAIPLLVDLLYVPDAATQEHAVTALLNLSINDANKECIMASEAVPGILHVLKNGSMEARANAAATFFCLSVLDENKVAIGASGAIQELVTLFREGSQRGKVDAATALFNLCLYQGNKGKAIRAGIVPKLIEMLTEPGGEMRDVALAIMAVVVSHPDGKAAIGSMNVVPTLVELITNGSPRNKENATSVLVHLCSGNPLHLSIVNSLGVINPLLDLAENGSERGKRKAAQLLELIGI* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01680 633 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Rops8g01680 633 SUPERFAMILY RING/U-box 261 337 - -
Rops8g01680 633 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 398 440 IPR000225 GO:0005515
Rops8g01680 633 Gene3D - 10 120 IPR036537 GO:0007166
Rops8g01680 633 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 334 IPR013083 -
Rops8g01680 633 Pfam Armadillo/beta-catenin-like repeat 552 591 IPR000225 GO:0005515
Rops8g01680 633 Pfam Armadillo/beta-catenin-like repeat 470 508 IPR000225 GO:0005515
Rops8g01680 633 Pfam Armadillo/beta-catenin-like repeat 389 426 IPR000225 GO:0005515
Rops8g01680 633 SUPERFAMILY ARM repeat 357 631 IPR016024 -
Rops8g01680 633 Pfam U-box domain 261 331 IPR003613 GO:0004842|GO:0016567
Rops8g01680 633 FunFam RING-type E3 ubiquitin transferase 344 632 - -
Rops8g01680 633 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Rops8g01680 633 CDD RING-Ubox_PUB 262 314 IPR045210 -
Rops8g01680 633 PANTHER U BOX DOMAIN-CONTAINING 32 630 - -
Rops8g01680 633 FunFam RING-type E3 ubiquitin transferase 261 333 - -
Rops8g01680 633 SMART arm_5 510 550 IPR000225 GO:0005515
Rops8g01680 633 SMART arm_5 469 509 IPR000225 GO:0005515
Rops8g01680 633 SMART arm_5 551 591 IPR000225 GO:0005515
Rops8g01680 633 SMART arm_5 387 427 IPR000225 GO:0005515
Rops8g01680 633 SMART arm_5 593 633 IPR000225 GO:0005515
Rops8g01680 633 Gene3D - 344 631 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01680 Rops-Chr8 37609811 37617697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01680 12 631 U-box Gene Family AT3G46510 53.686 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01680 - - vum:124836668 810.061