Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01676 ATGGAGTGTGAAGTGGAGTTGCAAGGAGGAGATCTGCATGCAGGGGTGGTAACTGAGACAGAACCTCTTGGTTTTGGCACCATGGAAGATGCAGAAACTTTGGCAGTTGCTGAGAGAGAGATGTGGCTTAACAGTGACCAAGATGATCTTTTAGGAGTAAATGATGCATCCATGTTCTATGCTGATTTCCCTCCTTTACCTGATTTCCCATGCATGTCATCATCTTCATCTTCATCTTCAACACCAGCACTACCACTGAAAAACATGACTTGTTCCACCACAACCACCTCCTCTTCTTCCACTGCTTCATCATCTTCTGCTGCTTCTTGGGCGGTTCTGAAGTTAGATGTTGAGGAAGATGCAGAGAAAAACAAGAACCAAAGTTACATGCAACAGCATGATCCACTAGATCAGGCAACAACACCTGCAGCACTGTCCTCAACTGCATCTATGGAGATTTCTCAACACCCTGATCCTGTTCTTGGTGGTACTATTGGAGATTGCATGGATGATGTTATGGACACTTTTGGGTACATGGAACTCTTAGAAGCCAATGATTTTTTTGACCCTGAATCTATTTTTCAGAATGAAGTAAACCCCTTAGTGGAGTTCTCACAGGAGCAGCAGGTTCCACAGTTAGAAGAAAATCAACATCAACATCAACATGCAATGGTAGTGCATAATAGGGAATCTACACCCCAACAAGGGACAGAGGAAGATCATCAGATTCTTGTGTGTGATGCTACCAACAACGAGGAAGAGATCCAAGGTGGTGCAGGTGGTGGTGATGGTGCAGATGATGAAATGAGCATGGTGTTCTTGGAGTGGCTTAAATCTAACAAGGATAGTGTCTCTGCTAATGATTTGAGGAATGTGAAGCTCAAGAAGTCCACAATAGAAAGTGCTGCAAGGCGTTTAGGTGGAGGAAAAGAAGCCATGAAACAATTGTTGAAGCTTATTCTTGAATGGGTTCAAACCAGCCATCTTCAGAATAAAAGGCTCAAGGAGAATAACAGTGCACCGCCAAATCTATTACCACAGTTTCTAGATCCTTGTCAGAACCAAAACACAAACAATGGTTCCAATCTTAACCCACGGTCATTTGCACCTGAATCAAATGCTTGTTTCAACCAAACACCTTGGCTTTCTCCACCACCTTTTGGGGCAGATCAACCTCCTCTCATGGTGGCCCCACAATCATTTTCACAACCCATGGTTGGGTATGGGGGTGACCCTTACACAAATGGTGCAACTTCAAACAACATCAATGGTTCTCATAACCATAACCCTTACCAACCTGCTACTGAATATCACATGCTGGAATCAACTCATTCATGGCCTGCTTCTCAGTTCACTGTTGCTTCTCACTATAATCAATCATTTGGGGACAATAATCTTCTCCCACCAGTGGCTGCTTTTGGCAACCAATACCCTTATCAGTTTTTTCATGGCCCTGGTGATAGGTTGATGAGGTTAGGTCCCTCAGCCACCAAAGAAGCAAGGAAGAAGAGGATGGCAAGGCAGAGAAGGTTCATGTCTCATCACAGGCATCATAATAATCACCACCAAAATCAAGACCCACATGCAAGATTGGGTAGTGATAATTGCACCACTGTTGTTGCTGCATCTCATGCAAATCCAGCCAATTGGATGTACTGGCAGACCATGGCTGGTGGGGCTCCTTCCTTGGCACCGGTGGTTCCGGCCGAGCCGCCGCCACCACAAGGACTACAGCCGGTGGATCGGCCGGCCATGCCGGCTCAGAATTGTCATCAGGGTCGAGTTGCATCAGATAGGAGACAGGGTTGGAAGCCTGAGAAGAACTTGAGGTTTCTTCTACAAAAGGTGCTGAAGCAAAGTGATGTGGGAAGTTTGGGGAGAATTGTTTTGCCAAAGAAAGAAGCAGAAACTCATTTACCAGAACTGGAGGCAAGAGATGGAATTTCCATTACAATGGAAGACATTGGAACTTCTCGTGTTTGGAACATGCGCTATAGATATTGGCCAAACAACAAAAGCAGAATGTATTTACTTGAGAACACTGGGGACTTTGTGAGAGCCAATGGACTCCAAGAGGGTGATTTCATAGTAATCTATTCAGATGTGAAATGTGGCAAATTTATGATAAGAGGAGTTAAAGTGAGGCAACAAGGGGGGAAACCAGAGACCAAGAAAGCAGGAAAATCGCAGAAAAACCAGCATGGGAATCATGCAGCAACTACAGCTGGAACTGCTGCTAATAATGGCACACCATCTTCACCGAAGCAAAAAATTGAAAAGGGTGGTAAATTAATATAA 2298 0.446 MECEVELQGGDLHAGVVTETEPLGFGTMEDAETLAVAEREMWLNSDQDDLLGVNDASMFYADFPPLPDFPCMSSSSSSSSTPALPLKNMTCSTTTTSSSSTASSSSAASWAVLKLDVEEDAEKNKNQSYMQQHDPLDQATTPAALSSTASMEISQHPDPVLGGTIGDCMDDVMDTFGYMELLEANDFFDPESIFQNEVNPLVEFSQEQQVPQLEENQHQHQHAMVVHNRESTPQQGTEEDHQILVCDATNNEEEIQGGAGGGDGADDEMSMVFLEWLKSNKDSVSANDLRNVKLKKSTIESAARRLGGGKEAMKQLLKLILEWVQTSHLQNKRLKENNSAPPNLLPQFLDPCQNQNTNNGSNLNPRSFAPESNACFNQTPWLSPPPFGADQPPLMVAPQSFSQPMVGYGGDPYTNGATSNNINGSHNHNPYQPATEYHMLESTHSWPASQFTVASHYNQSFGDNNLLPPVAAFGNQYPYQFFHGPGDRLMRLGPSATKEARKKRMARQRRFMSHHRHHNNHHQNQDPHARLGSDNCTTVVAASHANPANWMYWQTMAGGAPSLAPVVPAEPPPPQGLQPVDRPAMPAQNCHQGRVASDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKFMIRGVKVRQQGGKPETKKAGKSQKNQHGNHAATTAGTAANNGTPSSPKQKIEKGGKLI* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01676 765 Gene3D - 609 728 IPR015300 -
Rops8g01676 765 Pfam B3 DNA binding domain 614 710 IPR003340 GO:0003677
Rops8g01676 765 MobiDBLite consensus disorder prediction 732 755 - -
Rops8g01676 765 CDD BfiI_C_EcoRII_N_B3 611 712 - -
Rops8g01676 765 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 269 736 IPR044800 GO:0003700
Rops8g01676 765 FunFam B3 domain-containing transcription factor FUS3 609 724 - -
Rops8g01676 765 ProSiteProfiles B3 DNA-binding domain profile. 613 715 IPR003340 GO:0003677
Rops8g01676 765 SMART B3_2 613 713 IPR003340 GO:0003677
Rops8g01676 765 SUPERFAMILY DNA-binding pseudobarrel domain 612 708 IPR015300 -
Rops8g01676 765 MobiDBLite consensus disorder prediction 715 765 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01676 Rops-Chr8 37330841 37333831 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01676 39 746 B3 DNA Binding Superfamily AT3G24650 46.842 1.99e-160 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops8g01676 B3 3.5e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01676 K09287 - gmx:100795226 1038.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01676 8 37330841 37333831 Rops8g01676 8 37330841 37333831 ECH