Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01671 ATGGCGTTTCCGAAGTTTTTATCTCTCTACATTTCCATGTCTTTGTTCTTGTTCTTCTTTTGCTTCTGCAAAGCTAGTACCATCACAAAGTCTTTGTCTTCTCCTTCTACTTCCTCTGATGTTGAGCTTCTCTTGGGAAAGATCAAACCTTCACTGCAAGGTAACATAGACAACCTTGTTTTGTCTTCATGGAACTCCTCTATACCACTTTGCCAATGGAGAGGCCTTAAATGGGTGTTCTCCAATGGCTCTACTTTGTCATGCACTGACTTGTCTTCACCACTTTGGACCAGTCTTTCACTTCACAAGGACCCTTCTTTGCACTTGCTTTCTCTTCAGCTTCCATCTGCAAATCTCTCTGGTTCACTCCCAAGAGAGCTTGGGGAGTTCCCTATGCTTCAAAGTCTCTATCTTAACATTAATTCATTGAAAGGAACCATCCCTCTTGAGCTTGGTTATAGCTCCTCTCTCTCTGACATTGATTTGGGTGACAATATGCTGGATGGAGCTCTTCCTCCATCAATTTGGAATTTGTGTGAGAGGCTTGTTTCTCTTAGACTCCATGGTAATTTACTTTCTGGGTCTGTTTCTGAACCAGCATTGCCTAACTCATCTTGCAAGAATTTGCAATTTCTTGATTTGGGTAGCAACAAGTTTTCAGGGAATTTCCCTGAGTTCATTACAACGTTTGGTGCGCTAAAACAGCTTGATTTAGGGAATAACATGTTTATTGGTACAATTCCTCAAAGCTTAGTAGGGCTAAGACTTGAAAAATTGAATCTTTCTCAGAATAATTTTAGTGGGGTTTTGCCTTTCTTTGGAGAATCCAAATTTGGGGTCGATGCTTTTGAAGGGAACCCTGGCTTGTGTGGACCACCTTTGCCAAGTTGTACCAAGACCTCTACACTTAGTTCTGGTGCTGTTGCTGGTATTGTTATTAGTCTGATGACAGGAGCTGTGGTTTTGGCTTCTCTGCTGATTGGCTATATGCAAAACAAGAAGAGGAAGGGAAGTGAAGAGAGTGAAGATGAATTGAATGATGAAGAAGAAGATGAAGAAAACGGTGGTAATACTGTTGGTGGAGCTGGTGAGGGGAAGCTTATGTTATTCCCTGGAGGTGAGAATCTGACATTAGACGACGTGTTGAATGCAACTGGGCAAGTTATGGAGAAGACATGTTATGGTACAGCTTATAAGGCAAAGCTTGCTGATGGAGGCACCATTGCTTTGAGATTGTTGAGAGAAGGTAGCTGCAAGGATAAGACTTCATGCTTGTCAGTCATAAGGCAATTGGGAAAAATTCGCCATGAGAATTTGATTCCTTTGAGAGCTTTCTATCAGGGGAAGAGAGGGGAGAAGCTCCTTATTTATGACTATCTGCCTCTCAGAACACTTCATGATCTTTTACATGAACCTAAAGCAGGAAAACCGGTGCTGAACTGGGCAAGGCGACACAAGATTGCATTAGGTATAGCAAGAGGGCTAGCTTATCTTCATACAGGACTTGATGTTCCTATCACTCATGCGAATGTAAGGCCCAAGAATGTGCTTGTGGATGACTTCTTTGTTGCGAGGCTCACTGATTTTGGCCTTGATAAGCTGATGATTCCTTCCATAGCTGATGAAATGGTGGCACTTGCCAAGACTGATGGTTATAAGGCTCCAGAGCTTCAAAAAATGAAGAAATGTAACTCCAGGACTGATGTTTATGCATTTGGTATATTACTACTAGAAATCTTGATTGGGAAGAAACCTGGGAAGAATGGAAGAAGTGGTGAGTTTGTGGATTTGCCTTCAATGGTGAAAGTAGCAGTTTTGGAGGAGACAACAATGGAAGTGTTTGATGTGGAACTCTTGAAAGGGATAAGAAGTCCAATGGAAGATGGGTTGGTGCAGGCACTGAAACTGGCAATGGGATGCTGTGCACCAGTGGCTTCTGTTAGACCAAGCATGGATGAAGTTGTGAGGCAATTGGAGGAGAATAGACCAAGGAACAGGTCTGCTTTATACAGCCCTACAGAAACAAGAAGTGGAAGTATTACCCCATTTTGA 2052 0.4245 MAFPKFLSLYISMSLFLFFFCFCKASTITKSLSSPSTSSDVELLLGKIKPSLQGNIDNLVLSSWNSSIPLCQWRGLKWVFSNGSTLSCTDLSSPLWTSLSLHKDPSLHLLSLQLPSANLSGSLPRELGEFPMLQSLYLNINSLKGTIPLELGYSSSLSDIDLGDNMLDGALPPSIWNLCERLVSLRLHGNLLSGSVSEPALPNSSCKNLQFLDLGSNKFSGNFPEFITTFGALKQLDLGNNMFIGTIPQSLVGLRLEKLNLSQNNFSGVLPFFGESKFGVDAFEGNPGLCGPPLPSCTKTSTLSSGAVAGIVISLMTGAVVLASLLIGYMQNKKRKGSEESEDELNDEEEDEENGGNTVGGAGEGKLMLFPGGENLTLDDVLNATGQVMEKTCYGTAYKAKLADGGTIALRLLREGSCKDKTSCLSVIRQLGKIRHENLIPLRAFYQGKRGEKLLIYDYLPLRTLHDLLHEPKAGKPVLNWARRHKIALGIARGLAYLHTGLDVPITHANVRPKNVLVDDFFVARLTDFGLDKLMIPSIADEMVALAKTDGYKAPELQKMKKCNSRTDVYAFGILLLEILIGKKPGKNGRSGEFVDLPSMVKVAVLEETTMEVFDVELLKGIRSPMEDGLVQALKLAMGCCAPVASVRPSMDEVVRQLEENRPRNRSALYSPTETRSGSITPF* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01671 683 Pfam Leucine rich repeat 208 266 IPR001611 GO:0005515
Rops8g01671 683 ProSiteProfiles Protein kinase domain profile. 383 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01671 683 SUPERFAMILY L domain-like 73 295 - -
Rops8g01671 683 Gene3D Ribonuclease Inhibitor 39 200 IPR032675 -
Rops8g01671 683 MobiDBLite consensus disorder prediction 336 362 - -
Rops8g01671 683 FunFam Leucine-rich repeat receptor-like protein kinase 206 297 - -
Rops8g01671 683 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 17 662 IPR046959 -
Rops8g01671 683 Pfam Protein tyrosine and serine/threonine kinase 387 658 IPR001245 GO:0004672|GO:0006468
Rops8g01671 683 MobiDBLite consensus disorder prediction 664 683 - -
Rops8g01671 683 Gene3D Ribonuclease Inhibitor 201 299 IPR032675 -
Rops8g01671 683 SUPERFAMILY Protein kinase-like (PK-like) 392 659 IPR011009 -
Rops8g01671 683 Gene3D Transferase(Phosphotransferase) domain 1 461 675 - -
Rops8g01671 683 Gene3D Phosphorylase Kinase; domain 1 372 459 - -
Rops8g01671 683 MobiDBLite consensus disorder prediction 663 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01671 Rops-Chr8 37266193 37269255 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01671 9 683 Receptor kinase-like Gene Family AT3G24660 72.969 0.0 920
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Rops8g01671 PK_Tyr_Ser-Thr 4.9e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01671 - - gmx:100814814 1142.1