Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01670 ATGGATACAATACCGGAAGAATCATTTGTTGATTTGAATGATGATGGGGATTTGAATGATGGTGGGGATTTGAATGATGAGATGCCACCGACAGATTCGGACAATGGGTTACAGGAAAATCCAGGTTATAAGAGTTTGACTGACTTGAATCGTGATGAAATCTTACATTTAGAGTTTGGAAGTGAAGAGGAAGGTATAGATTTTTACAAAAAGTATGCAATGTACCATGGGTTTGTTGCTAGGAAAGATGATGTGTACAGAGATGTGAAGGGGAATGTTGTGATGCGCCAATTAGTATGCAATAGAGCTGGTCTAAGAAACAAAAAACATTATGAGAGGGTGGACAGAATAAGAGACCACAGACCAATCACGCGGACGAACTGTGAAGCAAAGTTTAGGATCCATTTTAAGTACAGTAGTAAGAAATGGAGGGTTGGATGTTTTGAGGATACACATAACCATAATCTTACACCACCGGAACATGTTCACCTACTCCCTGCATATCGTAGTTTGACATTTGCTGATGAAGCTCAAGTTGATAGCTTGCATGATTATGGTGTGAGGACATGTCATATATTGGGTTTCATGGTAGGTCAGAAAGGTGGATATGCAGAGTTAGGATTCTGCAAGAAGGATCTATATAATCATCTTGACAAGAAGAGGCGTGCAAATGTAGAAGATGGTGATGCATTCGGTTTACAGAAGGATGAACTTAACAGCGGATATGTTCACCGGAAGATGCAGAAACATGGGCCGAAAGGTGTTAGAGGTGTTAGGTTAGTGTATGTTGTTTACAAAAGGATGAAGTGGTGGTCATGTCCCGGCCGGTGGGCTTGTTGCACAGTGGTGGTGTGGATGGTTTATAACGACGTCACTGTTCAGCACATGAGGTGGCATTGTCAGAGGACTGAAGGTTACGGTAGATCCATCAGATTTCAGCTAGGTTTACTGTTTGCTACGTTCAGTGATCTACAGATGGATTCACAGACGAAGGAATTCGTTTCAACTGTCTCCCCAAATAAGGAAACGATTGACTTCCAAATGTCTTTCTACAATCGATGGGGCCGTGAATTAAGTGACAAAGTTTCTTTTGTTGACCCTGTTGGAAACACATTCGAAGTGTCCGTTGAATGCATAAACTCTGTTATGCAGTTTAAGACTGGATTTTTGGATCTTATTAACTTTTACAACATAACAGGTTGTATGTTTATTTTCTTCCGATACGTAGGTGCTAATCAATTCGAATTTCGTATAAGGAATGGTCAGTTGATGGAGTTGTCGTACCCTCGTCCAATGGCTACCGGGGATGTTGATGTTAACACCAGTGGTGATGATGGAAATCACGGCCACAGGGTCAACGCGAACATCGTCTCAGGTGAGCGATCCGATAATGGACAAATGGTATTGGCATGGCGAGTGCAGCTATCTACATCTCAAGCCGCTTGCAACCAACCATTGATTATACCGTCCCCAGTGGTGGACCGGGAACGACTACTTGGACAACGACATCTTTCTGTCTATGTCATGGGTGGTGGGGATCAGTTGTGGAGGTTGAGGTGGTCCCTAACGAGAGAAAATGAATGTCATATTGGGACACAATGGTATGCTTTCTGTCGGGATAATAATCTACATGAAGGGGATATTGCAGAGTTCTGGAGATATGCCGAACCTCGCAAATATGTAATTGGTTTGGTCCGTCTTCATGCAATGGCTGACGAGTCCCGTCGTTTTGATGTTCCCCTCCTACCAAACGAGAATAAATTCAAAATTCCTAGAAGTTTCTATAACAGATGGGGTCAAGAACTTGGAGACCTGGTTGATTTCATGGATCCGAATGGAAGGACGACGAAGTTTACTGTCATTCACGCACATGGACGACCTTTTTTTGCTGGGGGGATTACATCCTTCAGAGAATACTACAGGGTTGATGGCTTTGTGTTATTTACATTGCTTTATCAGGGGAATGGGTGTTTCCATTTTAGAGCCAGGGACAAATGGATGAATGAGATTCAATACGTCAATGTTGAAGAATCTGAAACTATTATTGTAGACTCGAATCCTGAAACTGGCAGTGAGATATCAATTGACGAATTTCTCCGACAACATGATTTTGAAGGTTTCAAATTTTCCTGGTCAGTGAAGTTGACCTCCGCTCAAGCATCTGGACGACAGACACTGGTTTGTTGGGTTCACTTACTGTTTGCATTACTGTTAGGTTCTACCAATTTACAAACGCAACTCCAATTTTGTTTTTTGTTTTGTTATTATACAGTGCATCCATCACATGTTGTTCAACATGCCCTTGTTCGTCACCAGCAGTTTATCGATATGTTGATTGATGAAGGTCCAACAACACGACAACAATGGCGATTGCATTGGGCCGATCGTAGGCCCAACCAATGTGCCATTGGGAGGGGATGGTACGAGTATTGTTGGGAGAACGCGTTGAGGAAAGACGACGAAGTCATTTTCTGCTATAACGAGGAACAAGACCTATTCAGGGTTGGAATCGATCGACCATCCATTTGA 2529 0.4259 MDTIPEESFVDLNDDGDLNDGGDLNDEMPPTDSDNGLQENPGYKSLTDLNRDEILHLEFGSEEEGIDFYKKYAMYHGFVARKDDVYRDVKGNVVMRQLVCNRAGLRNKKHYERVDRIRDHRPITRTNCEAKFRIHFKYSSKKWRVGCFEDTHNHNLTPPEHVHLLPAYRSLTFADEAQVDSLHDYGVRTCHILGFMVGQKGGYAELGFCKKDLYNHLDKKRRANVEDGDAFGLQKDELNSGYVHRKMQKHGPKGVRGVRLVYVVYKRMKWWSCPGRWACCTVVVWMVYNDVTVQHMRWHCQRTEGYGRSIRFQLGLLFATFSDLQMDSQTKEFVSTVSPNKETIDFQMSFYNRWGRELSDKVSFVDPVGNTFEVSVECINSVMQFKTGFLDLINFYNITGCMFIFFRYVGANQFEFRIRNGQLMELSYPRPMATGDVDVNTSGDDGNHGHRVNANIVSGERSDNGQMVLAWRVQLSTSQAACNQPLIIPSPVVDRERLLGQRHLSVYVMGGGDQLWRLRWSLTRENECHIGTQWYAFCRDNNLHEGDIAEFWRYAEPRKYVIGLVRLHAMADESRRFDVPLLPNENKFKIPRSFYNRWGQELGDLVDFMDPNGRTTKFTVIHAHGRPFFAGGITSFREYYRVDGFVLFTLLYQGNGCFHFRARDKWMNEIQYVNVEESETIIVDSNPETGSEISIDEFLRQHDFEGFKFSWSVKLTSAQASGRQTLVCWVHLLFALLLGSTNLQTQLQFCFLFCYYTVHPSHVVQHALVRHQQFIDMLIDEGPTTRQQWRLHWADRRPNQCAIGRGWYEYCWENALRKDDEVIFCYNEEQDLFRVGIDRPSI* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01670 842 Gene3D - 470 577 IPR015300 -
Rops8g01670 842 Pfam FAR1 DNA-binding domain 67 157 IPR004330 -
Rops8g01670 842 MobiDBLite consensus disorder prediction 1 22 - -
Rops8g01670 842 SUPERFAMILY DNA-binding pseudobarrel domain 760 840 IPR015300 -
Rops8g01670 842 SUPERFAMILY DNA-binding pseudobarrel domain 485 563 IPR015300 -
Rops8g01670 842 ProSiteProfiles B3 DNA-binding domain profile. 471 568 IPR003340 GO:0003677
Rops8g01670 842 Gene3D - 731 840 IPR015300 -
Rops8g01670 842 MobiDBLite consensus disorder prediction 1 44 - -
Rops8g01670 842 SUPERFAMILY DNA-binding pseudobarrel domain 586 664 IPR015300 -
Rops8g01670 842 PANTHER OS01G0519700 PROTEIN 52 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01670 Rops-Chr8 37223155 37236702 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Rops8g01670 FAR1 1.7e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01670 - - ccaj:109792835 258.07