Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01668 ATGGAAAGGTTCACTCTCTGCGTTCTGATCATGGCGCTACTTTTAGCTGCTACCAATGCCACTGGTCACAATGAGAAACACAAACAGAAAGCGAAAGAAACAAGGGATGTAGAGATAGAAGAGAAGTTGAGGATGCAGAGTTTGAAGAATTCATCATTGGCAGAAAGGTCAAGGGGTGCTTTGAATGAGCATGCAGTTGATAATCCAGAGGAAATTGCTTCCATGGTTGATACGACCGTACGTAATCACACGGAAAGAAGGAATCTGAATTTTTTCTCATGTGGGACCGGGAATCCAATTGATGACTGCTGGCGTTGTGACAAGCGTTGGTACCTCAGGCGAAAGCGTTTGGCTGATTGTGCCATCGGTTTCGGTCGCAACGCCGTGGGTGGCCGTGACGGAAAATACTACGTCGTGACGGACCCGAGTGACGATGACGCCGTGAACCCGAAACCAGGGACCCTCCGTCACGCCGTCATTCAAGACAGGCCATTATGGATTGTGTTCAAGAGGGACATGGTGATCACTCTCAAGCAAGAACTCATCATGAATAGCTTCAAGACCATTGATGGTCGTGGTGCTAATGTTCACATTGCCTTTGGTGGTTGCATTACCATCCAGTTCATCACCAATGTCATCATCCATGGTGTCCATATCCATGATTGCAAGCCCACTGGCAATGCCATGGTTCGTAGCTCTCCCTCGCATTATGGATGGAGGACCATGGCTGATGGTGATGGCATTTCCATCTTTGGGTCGAGTCACATTTGGATTGACCACAACTCACTCTCCAATTGCGCTGATGGCCTTGTTGATGCTATTATGGGCTCCACTTCCATTACCATTTCCAATAACTATTTCACCCACCACAATGAGGTCATGCTACTGGGTCATAGTGACTCTTATGTCCGTGACAAGCAGATGCAAGTAACCATTGCATACAACCATTTTGGGGAGGGTCTTATCCAAAGAATGCCAAGGTGCAGGCATGGGTATTTCCACGTGGTAAACAATGATTATACCCACTGGGAAATGTATGCAATTGGTGGAAGCGCTAACCCCACAATCAACAGCCAAGGCAACAGATACCTTGCCCCTCAGAACCCTTTTGCTAAGGAGGTAACAAAGAGGGTGGATACAGGAGACACCGTATGGAAAGGTTGGAATTGGAGGTCTCAGGGAGATCTTTTGCTCAATGGAGCCTTTTTCACTTCATCAGGAGCAGGAGCTGCAGCAAGCTATGCTAGAGCCTCAAGTTTGGGGGCCAAATCATCTTCTTCAGTTGGTACTATTACTTCAGGTGCTGGTGTTCTTGGCTGTCGCAGGGGTGTCATGTGTTGA 1341 0.478 MERFTLCVLIMALLLAATNATGHNEKHKQKAKETRDVEIEEKLRMQSLKNSSLAERSRGALNEHAVDNPEEIASMVDTTVRNHTERRNLNFFSCGTGNPIDDCWRCDKRWYLRRKRLADCAIGFGRNAVGGRDGKYYVVTDPSDDDAVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAFGGCITIQFITNVIIHGVHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSNCADGLVDAIMGSTSITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPQNPFAKEVTKRVDTGDTVWKGWNWRSQGDLLLNGAFFTSSGAGAAASYARASSLGAKSSSSVGTITSGAGVLGCRRGVMC* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01668 446 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Rops8g01668 446 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Rops8g01668 446 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Rops8g01668 446 PRINTS Pollen allergen Amb family signature 417 440 IPR018082 -
Rops8g01668 446 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Rops8g01668 446 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Rops8g01668 446 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Rops8g01668 446 PRINTS Pollen allergen Amb family signature 346 365 IPR018082 -
Rops8g01668 446 SUPERFAMILY Pectin lyase-like 75 440 IPR011050 -
Rops8g01668 446 Gene3D - 97 439 IPR012334 -
Rops8g01668 446 SMART amb_all 172 369 IPR002022 -
Rops8g01668 446 FunFam Pectate lyase 97 439 - -
Rops8g01668 446 Pfam Pectate lyase 180 361 IPR002022 -
Rops8g01668 446 PANTHER PECTATE LYASE 18-RELATED 65 443 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01668 Rops-Chr8 37177248 37182651 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01668 34 446 Polysaccharide Lyase AT4G13710 75.772 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01668 K01728 - gmx:100809277 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01668 8 37177248 37182651 Rops8g01668 8 37177248 37182651 ECH