Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01666 ATGGTAGTGATTGAGCATGGGGAGGTTGACGATCGAAACGCGAATCCCTCAAAAGCCGGTGCCGGAAACGAAGCTTCCGACGGCTTCGAAACCGCCAGCGATGCCGATCTCGACAGCGACGGTGACGGCAACGACGGCGGAGCTATCAACCGGGAAGGACAGGAGCATCATGAGCAACATCAACAGCAGAAGCAGACAGAGGAAGAGCAGGAGCAAGTTGTTGCTCAGAGAAGCATTTCCTCGGAGGATGCCTCGAACAATGATGAAGAATTGAAACAGAAAGCATTGGTTCAAGCAAATGAAGCAAAGGTAGAAGGGAACAAACTTTTTGTGGATGGGAAGTATGAGGAGGCATTATCGCAATATGAACTTGCTTTACAAGTTGCACCAGACATGCCTTCATCTGTGGAAATACGCTCAATATGCCATGCAAACCGTGCTGTGTGCTTTCTGAAAATGGGAAAATATGAAAACACAGTTAAAGAATGCACAAAAGCATTAGAGCTGAATCCTGTGTATGTCAAAGCTTTGGTAAGAAGAGGAGAGGCCCACGAAAAGCTTGAGCATTTTGAAGAGGCCATTGCTGATATGAAAAAGATCTTAGAAATCGATCCCTCAAATGATCAAGCCAGGAAAGCCATTCGCCGACTAGAGCCTCTTGCTGCAGAAAAACGGGAAAAGATGAAGGAAGAAATGATTGGAAAACTGAAAGAAATGGGCAACTCTGTCTTGGGCCGCTTTGGGATGAGCGTAGACAACTTTAAAGCAGTCAAAGATCCAAACACTGGTTCCTATTCTGTCTCATTCCAACGCTAA 816 0.4608 MVVIEHGEVDDRNANPSKAGAGNEASDGFETASDADLDSDGDGNDGGAINREGQEHHEQHQQQKQTEEEQEQVVAQRSISSEDASNNDEELKQKALVQANEAKVEGNKLFVDGKYEEALSQYELALQVAPDMPSSVEIRSICHANRAVCFLKMGKYENTVKECTKALELNPVYVKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKAIRRLEPLAAEKREKMKEEMIGKLKEMGNSVLGRFGMSVDNFKAVKDPNTGSYSVSFQR* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01666 271 Gene3D Tetratricopeptide repeat domain 59 235 IPR011990 GO:0005515
Rops8g01666 271 MobiDBLite consensus disorder prediction 1 90 - -
Rops8g01666 271 ProSiteProfiles TPR repeat profile. 174 207 IPR019734 GO:0005515
Rops8g01666 271 Pfam Tetratricopeptide repeat 175 207 IPR013105 -
Rops8g01666 271 SUPERFAMILY TPR-like 99 218 IPR011990 GO:0005515
Rops8g01666 271 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 36 271 - -
Rops8g01666 271 ProSiteProfiles TPR repeat profile. 99 132 IPR019734 GO:0005515
Rops8g01666 271 SMART tpr_5 174 207 IPR019734 GO:0005515
Rops8g01666 271 SMART tpr_5 140 173 IPR019734 GO:0005515
Rops8g01666 271 SMART tpr_5 99 132 IPR019734 GO:0005515
Rops8g01666 271 MobiDBLite consensus disorder prediction 49 71 - -
Rops8g01666 271 Pfam Tetratricopeptide repeat 142 171 IPR001440 GO:0005515
Rops8g01666 271 Coils Coil 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01666 Rops-Chr8 37117232 37122616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01666 99 230 Calmodulin-binding Proteins AT3G25230 39.286 1.23e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01666 K24926 - gmx:100808386 369.777