Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01638 ATGAAGCCCGCTTTGGCTCAAGCTCAGACTCAGAGCAATTGGGAAGCTGATAAAATGCTTGATGTTTACATTCATGATTATTTTGTGAAAAGAAAATTACACACAGCTGCAAAAGCTTTCATGACAGAAGGCAAAGTTTCCACTGATCCAGTAGCAATTGATGCACCTGGAGGATTTCTTTATGAGTGGTGGTCTGTCTTTTGGGACATATTCATCTCGAGGACTAATGAGAAACATTCTGAGGCTGCTGCAGCTTACATTGAGACCCAGCAAACAAAGGCCAGAGAACAACAACTTCAAATGCAGCAATTGCAACTAATGCAGCAGCGCAATGCACAGTTACAGCGAAGAGATCCCAATCATTCCGCACTTGGTGGATCCTTAAATGCCATGAACTCTGAAGGAATGTTGGGGCAGTCGCCAGCAAGTGTTTTGGCCATGAAAATGTATGAAGAACGGATGAAACACCCTCATTCTATGGATTCAGAGGCATCTCCAACTCTTATTGATGCAAATAGGATGGCCCTTCTCAAATCAGCAACAAGTCATCAAGGCCAGTTGGTTCATGGTAACTCGGGGAATATGTCCACTGCATTGCAACAAATTCAGGCACGAACTCCGTTGACCACTGACATCAAAGGAGAGGTTAATTTAGGTGCTACTCCAAAGAGTTTGCCTATGGATACATCAGTTTATCGACAAGCAATTTTACAATCAAAATCTGGGCTAGGCAGTGCAGGATTAAATCAAGGAGTTACAAGTCTTCCATTGAAGGGGTGGCCTCTAACTGGAATTGATCAAATAAGAACTAATTTGGGTGTACAAGTTCAAAAGCCTAATTTGACAACCCAAACCCAATATCTATTGGCATCACAACAACAGCAGGTCTTGGCACAAGCTCAGGCACAAAACAACCTTGGAAATTCTAATTATGGTGATATGGATCCACGTCTTCCTCGAGGTAGCTTAAATGCAAAGGATGGTCAGTCTACCAGGAATGATGGATCTATTTGCTCCCAAATGCAGTCAGGTTCCCCTAAGATGAAGATGGCCCAGTCTTCATTATCTCAACAGCAGGAGCAACTGCAGCAGAATAACAGAAAAAGAAAGCAGCCTTCTTCTTCTGGACCTGCCAATAGCACGGGTACTGGAAATACAGCTGGTCCTTCACCTAATTCACCAGCATCAACACACACACCTGGTGATGGATTAAATACAGCAAGCAGCATGCAGCATGTTAACAGTGGGCAGAAGAGCATGATGATGTATGGTACAGAGGCAACGGGAGGCCTTGCATCATCTTCAAATTTGATGGAGGACATAGAACGATTTGGAGATGTTGGTGTTTTAGATGATAATGTGGAATCCTTTCTATCAAATGATGGAGCAGATGGTGGCAATCTCTATGGAACAATAAAACAAAGTCCAGCTGAGCAACCAAAAGAGTCTTCAAAAGGTTTCACCTTTGGTGAATTTGGTTGCATAAGAACAAGGAACAGCAAAATTACTAGCTGTCACTTTTCTTCAGATGGAAAGTGGCTTGCCAGTGCTGGGGATGATATTAAGGTTGTTCTCTGGAACATGGACACTTTACAGACAGAGATCACTCCGGAAGACCACAAATTAGCGATTTCAGATGTCCGTTTTAGACCAAACTCATCTCAGTTGGCGACAGCTTCTTATGATAAATCTGTGCGGTTATGGGACGCAGCTCATCCAAGCTATTGTGAGCAAGAGTATAGTGGGCACAGTTCAGCTATTACATCCCTTGATTTCCACCCTAAGAAGACTGATATTTTCTGCTTCTGTGATAGTGAAAATGAAATTCGGTATTGGAACATTACTTCATCCTCCTGCACCCGTGTGTCTAAGGGAGGTAATACACGAGTGAGGTTTCAGCCTAGATTGGGACGTTTATTGGCAGCAGCTTCTGATAAAGTAGTGTCAATTTTTGATGTTGAAACTGACAGACAAATTTACTCACTCCAGGGTCATCCTGAATTGGTGAACTGTATTTGCTGGGATGCGAGTGGAGATGTCTTGGCATCTGTGAGCCCAAATTTGGTGAAGATTTGGTCTTTGGCCACCGGAGAATGCATTCAAGAGCTCAGCTCTAGCGGAAACCAGTTTTACTCCAGTGTTTTCCATCCAAGTTATTCAACTTTATTAGTAATAGGAGGTTATTCGTCCTTCGAGCTGTGGAACATGGCTGACAACAAAAGCATGACAATTCCTGCACATGAGGGTATAATATCTGCTTTGGCTCAGTCTCCTGTTACTGGAATGGTTGCCTCTGCAAGTCATGACAACTCTGTAAAGTTGTGGAAATAA 2331 0.4303 MKPALAQAQTQSNWEADKMLDVYIHDYFVKRKLHTAAKAFMTEGKVSTDPVAIDAPGGFLYEWWSVFWDIFISRTNEKHSEAAAAYIETQQTKAREQQLQMQQLQLMQQRNAQLQRRDPNHSALGGSLNAMNSEGMLGQSPASVLAMKMYEERMKHPHSMDSEASPTLIDANRMALLKSATSHQGQLVHGNSGNMSTALQQIQARTPLTTDIKGEVNLGATPKSLPMDTSVYRQAILQSKSGLGSAGLNQGVTSLPLKGWPLTGIDQIRTNLGVQVQKPNLTTQTQYLLASQQQQVLAQAQAQNNLGNSNYGDMDPRLPRGSLNAKDGQSTRNDGSICSQMQSGSPKMKMAQSSLSQQQEQLQQNNRKRKQPSSSGPANSTGTGNTAGPSPNSPASTHTPGDGLNTASSMQHVNSGQKSMMMYGTEATGGLASSSNLMEDIERFGDVGVLDDNVESFLSNDGADGGNLYGTIKQSPAEQPKESSKGFTFGEFGCIRTRNSKITSCHFSSDGKWLASAGDDIKVVLWNMDTLQTEITPEDHKLAISDVRFRPNSSQLATASYDKSVRLWDAAHPSYCEQEYSGHSSAITSLDFHPKKTDIFCFCDSENEIRYWNITSSSCTRVSKGGNTRVRFQPRLGRLLAAASDKVVSIFDVETDRQIYSLQGHPELVNCICWDASGDVLASVSPNLVKIWSLATGECIQELSSSGNQFYSSVFHPSYSTLLVIGGYSSFELWNMADNKSMTIPAHEGIISALAQSPVTGMVASASHDNSVKLWK* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01638 776 MobiDBLite consensus disorder prediction 306 413 - -
Rops8g01638 776 ProSitePatterns Trp-Asp (WD) repeats signature. 514 528 IPR019775 -
Rops8g01638 776 ProSiteProfiles Trp-Asp (WD) repeats profile. 744 776 IPR001680 GO:0005515
Rops8g01638 776 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 495 530 - -
Rops8g01638 776 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 537 569 - -
Rops8g01638 776 ProSiteProfiles Trp-Asp (WD) repeats profile. 537 569 IPR001680 GO:0005515
Rops8g01638 776 SUPERFAMILY WD40 repeat-like 494 776 IPR036322 GO:0005515
Rops8g01638 776 Gene3D - 628 776 IPR015943 GO:0005515
Rops8g01638 776 PRINTS G protein beta WD-40 repeat signature 514 528 IPR020472 -
Rops8g01638 776 PRINTS G protein beta WD-40 repeat signature 556 570 IPR020472 -
Rops8g01638 776 PRINTS G protein beta WD-40 repeat signature 763 776 IPR020472 -
Rops8g01638 776 ProSiteProfiles Trp-Asp (WD) repeats profile. 580 622 IPR001680 GO:0005515
Rops8g01638 776 Coils Coil 87 117 - -
Rops8g01638 776 ProSiteProfiles Trp-Asp (WD) repeats profile. 495 536 IPR001680 GO:0005515
Rops8g01638 776 SMART WD40_4 616 652 IPR001680 GO:0005515
Rops8g01638 776 SMART WD40_4 488 527 IPR001680 GO:0005515
Rops8g01638 776 SMART WD40_4 530 569 IPR001680 GO:0005515
Rops8g01638 776 SMART WD40_4 655 693 IPR001680 GO:0005515
Rops8g01638 776 SMART WD40_4 737 776 IPR001680 GO:0005515
Rops8g01638 776 SMART WD40_4 696 735 IPR001680 GO:0005515
Rops8g01638 776 SMART WD40_4 573 613 IPR001680 GO:0005515
Rops8g01638 776 Gene3D - 470 627 IPR015943 GO:0005515
Rops8g01638 776 ProSiteProfiles LIS1 homology (LisH) motif profile. 16 48 IPR006594 GO:0005515
Rops8g01638 776 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 744 776 - -
Rops8g01638 776 MobiDBLite consensus disorder prediction 324 413 - -
Rops8g01638 776 Pfam WD domain, G-beta repeat 658 693 IPR001680 GO:0005515
Rops8g01638 776 Pfam WD domain, G-beta repeat 500 527 IPR001680 GO:0005515
Rops8g01638 776 Pfam WD domain, G-beta repeat 576 613 IPR001680 GO:0005515
Rops8g01638 776 Pfam WD domain, G-beta repeat 537 569 IPR001680 GO:0005515
Rops8g01638 776 Pfam WD domain, G-beta repeat 743 776 IPR001680 GO:0005515
Rops8g01638 776 Coils Coil 348 368 - -
Rops8g01638 776 CDD WD40 499 776 - -
Rops8g01638 776 Pfam LisH 18 44 IPR006594 GO:0005515
Rops8g01638 776 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 14 776 IPR044716 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01638 Rops-Chr8 36655453 36664307 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01638 540 736 Miscellaneous Gene Families AT5G08390 25.616 3.23e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Rops8g01638 WD40 0.085 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01638 - - gmx:100786946 1217.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01638 8 36655453 36664307 Rops8g01638 8 36655453 36664307 ECH