Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01637 ATGGAGAACAACGCATTCAAAGATCGAAACTTTGAGGATAATGAACAAGAAGAACAAATCCCAGATTCCTTTTGTTGCTGCGTTTGCCTGGATCTATTATACAAACCCATTGTGCTATCTTGTGGTCACATATGCTGTTTCTGGTGTGTCTATAAATCAATGAATTGTTTGCGTGAGTCTCAATGTCCAATATGTAGGCATCAATACTATCACTTTCCAACAGTCTGCCAAATGCTTCACTTTTTGCTTCTCAACATCTATCCCGTTGCTTATAATAGAAGGATAAATCAAACTCTTGAGGAAGAAAAGAAATCAGGCTTCTACTCCCCTCAATTTGATCCTGATACATGTGGAGCACAGGCTAAATTTGGTCATTCTGGTAGCCCATGTTCCTCCTCTAATATAAATCTGGTGTCCAACTCATGCCATGTGGGAACTTCTGACCGTATGGAGCAATCAGGGTCCCCTGCCAGTGAAGTAGATGAAGGCACCATCTCTTCTGAACACTCTTCTGATGGAGAACCTGAAATTATTGGGACTCCTTTTGAAGGAAAAAAATTGTCTCAGGATGAGCTTTATCTACCACAGAAAATATCAGTTGAAGATGTGATGTGTACAATATGCAAGCAACTGCTCTTTCATCCCGTAGTTCTTAATTGTGGTCATGTATACTGTGAAACTTGTGTCGTCAACTTGGCCGATGAGATGCTCAGATGTCAAGTTTGTCAAAGTCCACATCCAAGAGGATTTCCAAAAGTGTGTTTGGAGTTTGATCACTTTTTGGGGGAACAATTTCCTGAAGATTATGCACGACGAAGAGATGCTATCGAACTAAGGCAATTCAAAGTCAAACCTGAGACCCCCCCTTCTTGTTCACTGGTTAATGGTAACAAAGGAGAAAATGTTGAATGGTGGTCTGATCCTGACTCAAAAGTTCACATTGGAGTTGGTTGTGATTTTTGTGGGATGTTTCCTATCATTGGAGATAGATACAGATGCATTGACTGTAAGGAGAAGATGGGTTTTGATCTTTGTAGTGATTGCTATGACACACGGTCCAAGCTTCCGGGCCGATTTAATCAACAACACACCTCAGAGCACAGGTTCAAGCTTGTACAACCCAATATTATTCGTAGCATAATGTTGAGGCTGGTCACTGGACAGTTTGGGGACAGTTCTATTGACAGCGAAGCTTCAGGAAACTTAGAATTTGCATCTGAAGCCTCTGCTTTGTTTGATGATGATGGAGAAGATAACCAGAATGATTCTGAAGCTACCAATTGA 1284 0.4104 MENNAFKDRNFEDNEQEEQIPDSFCCCVCLDLLYKPIVLSCGHICCFWCVYKSMNCLRESQCPICRHQYYHFPTVCQMLHFLLLNIYPVAYNRRINQTLEEEKKSGFYSPQFDPDTCGAQAKFGHSGSPCSSSNINLVSNSCHVGTSDRMEQSGSPASEVDEGTISSEHSSDGEPEIIGTPFEGKKLSQDELYLPQKISVEDVMCTICKQLLFHPVVLNCGHVYCETCVVNLADEMLRCQVCQSPHPRGFPKVCLEFDHFLGEQFPEDYARRRDAIELRQFKVKPETPPSCSLVNGNKGENVEWWSDPDSKVHIGVGCDFCGMFPIIGDRYRCIDCKEKMGFDLCSDCYDTRSKLPGRFNQQHTSEHRFKLVQPNIIRSIMLRLVTGQFGDSSIDSEASGNLEFASEASALFDDDGEDNQNDSEATN* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01637 427 FunFam E3 ubiquitin-protein ligase PRT1 307 372 - -
Rops8g01637 427 Gene3D - 306 372 IPR043145 -
Rops8g01637 427 PANTHER UNCHARACTERIZED 13 422 - -
Rops8g01637 427 SUPERFAMILY RING/U-box 307 372 - -
Rops8g01637 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 286 IPR013083 -
Rops8g01637 427 FunFam E3 ubiquitin-protein ligase PRT1 192 287 - -
Rops8g01637 427 SUPERFAMILY RING/U-box 200 246 - -
Rops8g01637 427 MobiDBLite consensus disorder prediction 145 164 - -
Rops8g01637 427 ProSitePatterns Zinc finger RING-type signature. 220 229 IPR017907 -
Rops8g01637 427 FunFam E3 ubiquitin-protein ligase PRT1 15 112 - -
Rops8g01637 427 MobiDBLite consensus disorder prediction 145 176 - -
Rops8g01637 427 ProSiteProfiles Zinc finger RING-type profile. 205 243 IPR001841 -
Rops8g01637 427 Pfam RING-type zinc-finger 205 229 IPR027370 -
Rops8g01637 427 ProSiteProfiles Zinc finger ZZ-type profile. 313 377 IPR000433 GO:0008270
Rops8g01637 427 SUPERFAMILY RING/U-box 13 71 - -
Rops8g01637 427 SMART ring_2 26 65 IPR001841 -
Rops8g01637 427 SMART ring_2 205 242 IPR001841 -
Rops8g01637 427 ProSiteProfiles Zinc finger RING-type profile. 26 66 IPR001841 -
Rops8g01637 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 136 IPR013083 -
Rops8g01637 427 Pfam Zinc finger, ZZ type 314 353 IPR000433 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01637 Rops-Chr8 36636449 36649378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01637 24 68 C3H Transcription Factor Family AT2G42030 37.778 4.60e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01637 - - gmx:100787174 710.679