Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01633 ATGAGGCTTGTTGGGTGGAAAGCCCAACCCACAGTTGACACAAAAACCCTAGCTGCCTTGCTGCCTCTCTTATACTCAGAACAAAACCTGGGGAGGCACCGAAACACCAGATTAGAAGAAGCTAAGGGAAAGGTGTGTGTGTGTGAGAGTGTTAGAGAGAAGATGGTGTCAGGTTCTGGTGTGTGCGCAAAGAGGGTTGTGGTGGACGCTCGTCACCACATGCTTGGTCGTCTCGCATCGATCGTGGCAAAGGAACTGCTCAATGGCCAAAAGGTTGTTGTGGTTAGGTGTGAGGAGATTTGCATCTCTGGTGGACTCGTAAGGCAGAAAATGAAGTACATGCGTTTTCTCCGAAAGCGTATGAACACAAAGCCCTCTCATGGTCCCATTCATTTTCGTGCCCCTTCCAAGATCTTCTGGCGCACCGTTCGTGGAATGATTCCACATAAGACTAAGCGTGGGGAAGGTGCTCTTGCTCGATTGAAGGTTTATGAGGGTATCCCTCCTCCTTATGACAAGATGAAGAGGATGGTTGTCCCTGATGCTTTGAAGGTTTTGAGGCTTCAAAAGGGACACAAATATTGCCTGCTGGGTAAATTGTCATCTGAGGTTGGATGGAACTACTATGATACCATCAGGGAGCTGGAGAAGAAGAGAAAGGAAAGAGCTGGCTTGAATTATGAGAAGAAGAAGCAGCTTGCCAAATTGAGGGTCAAGGCTGAGAAGGTTGCAGAGGAGAAGCTTGGTTCTCAACTTGAAATTCTTGCTCCCGTTAAGTACTGA 783 0.4789 MRLVGWKAQPTVDTKTLAALLPLLYSEQNLGRHRNTRLEEAKGKVCVCESVREKMVSGSGVCAKRVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGEGALARLKVYEGIPPPYDKMKRMVVPDALKVLRLQKGHKYCLLGKLSSEVGWNYYDTIRELEKKRKERAGLNYEKKKQLAKLRVKAEKVAEEKLGSQLEILAPVKY* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01633 260 FunFam 60S ribosomal protein L13a-4 62 208 - -
Rops8g01633 260 Gene3D Ribosomal protein L13 61 208 IPR036899 GO:0003735|GO:0005840|GO:0006412
Rops8g01633 260 Gene3D - 210 260 - -
Rops8g01633 260 PANTHER RIBOSOMAL PROTEIN L13 56 242 IPR005822 GO:0003735|GO:0005840|GO:0006412
Rops8g01633 260 FunFam 60S ribosomal protein L13a 209 260 - -
Rops8g01633 260 NCBIfam 50S ribosomal protein L13 66 208 IPR005755 GO:0003735|GO:0006412|GO:0015934
Rops8g01633 260 CDD Ribosomal_L13 66 167 IPR005822 GO:0003735|GO:0005840|GO:0006412
Rops8g01633 260 ProSitePatterns Ribosomal protein L13 signature. 143 166 IPR023563 GO:0003735|GO:0005840|GO:0006412
Rops8g01633 260 Pfam Ribosomal protein L13 64 169 IPR005822 GO:0003735|GO:0005840|GO:0006412
Rops8g01633 260 Hamap 50S ribosomal protein L13 [rplM]. 65 189 IPR005822 GO:0003735|GO:0005840|GO:0006412
Rops8g01633 260 SUPERFAMILY Ribosomal protein L13 66 208 IPR036899 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01633 Rops-Chr8 36453251 36454546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01633 55 260 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 88.835 2.64e-137 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01633 K02872 - gmx:100784830 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01633 8 36453251 36454546 Rops8g01633 8 36453251 36454546 ECH