Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01628 ATGTCTCTTTCAAAACCCATAGAGGATAAACTAAACAACAACACTCTTCAGCATTTGGTGAAGGAAGGAGGAGCAGCAAAGGGAGCACCCTCTTCCTCCTCCTCTTCATGGAATAATAGACTCAGCAATAGCAGAAACTCTTTCCCTTCAGGAAGCAAACTTGAAGAAAGTGATGAAGATATGTTCACGGTTCCGGATGTGGAAGCAACACCATCACCAAGTGTGCATTCTGCAGTTGCAAATCCAAATAGTCAGAGCAATGTGACAGATCCTCAGCTTCAAACTGGTTTCTCTGGAAAGCGCCGCCGCGGAAGAAACCCTATAGACAAGGAATATAGACGCCTTAAGAGGTTATTGAGGAATAGGGTTTCTGCCCAACAAGCCCGTGAAAGAAAAAAGGTCTATGTGAATGACTTGGAATCGAGAGCTAAAGAGTTAGAAGACAAGAATTCCAAGCTAGAAGAGCGTATCTCGACTTTAATCAATGAGAACACCATGCTCCGGAAGGTTCTTATGAACACGAGGCCCAAAGTTGATGAAAGCATTGAAGCATAG 555 0.4378 MSLSKPIEDKLNNNTLQHLVKEGGAAKGAPSSSSSSWNNRLSNSRNSFPSGSKLEESDEDMFTVPDVEATPSPSVHSAVANPNSQSNVTDPQLQTGFSGKRRRGRNPIDKEYRRLKRLLRNRVSAQQARERKKVYVNDLESRAKELEDKNSKLEERISTLINENTMLRKVLMNTRPKVDESIEA* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01628 184 SMART brlzneu 109 173 IPR004827 GO:0003700|GO:0006355
Rops8g01628 184 MobiDBLite consensus disorder prediction 28 51 - -
Rops8g01628 184 MobiDBLite consensus disorder prediction 74 96 - -
Rops8g01628 184 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 16 180 IPR044280 GO:0000981|GO:0045944
Rops8g01628 184 FunFam Transcription factor HY5 132 173 - -
Rops8g01628 184 Gene3D Single helix bin 132 173 - -
Rops8g01628 184 MobiDBLite consensus disorder prediction 1 108 - -
Rops8g01628 184 MobiDBLite consensus disorder prediction 1 19 - -
Rops8g01628 184 Pfam bZIP transcription factor 110 169 IPR004827 GO:0003700|GO:0006355
Rops8g01628 184 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 111 174 IPR004827 GO:0003700|GO:0006355
Rops8g01628 184 Coils Coil 129 170 - -
Rops8g01628 184 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 116 131 IPR004827 GO:0003700|GO:0006355
Rops8g01628 184 SUPERFAMILY Leucine zipper domain 112 172 IPR046347 GO:0003700|GO:0006355
Rops8g01628 184 CDD bZIP_HY5-like 123 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01628 Rops-Chr8 36395095 36399824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01628 77 180 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT3G17609 67.593 6.08e-44 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops8g01628 bZIP_1 1.4e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01628 K16241 - gmx:100783826 228.794