Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01615 ATGATGGGTTTCAGCAGCTATGCAAATTTGTTCTGTGTTTTGTTCTTGCTGCGTTGTTATTTGTTACACGTTGGTGTTGCCATAGACACCATCACATCATCTAAATCAATCAAGGACCCTGAAACTCTAAGTTCCAAAGATGGTAACTTCATTTTGGGATTCTTCAGCCCTCAAAATTCTACAAATCGCTACGTTGGAATTTGGTGGAAGTCTCCATCCATAATCATATGGGTGGCTAACAGAAAGGAACCACTAAATGATTCTTCTGGGGTTGTCACAATATATGAAGATGGCAATCTTGTGGTATTGAATGGACAGAAACGAGTCATTTGGTCATCAAATGTGTCCAACATAGCATCAAATACCAGTTCCCAGTTTTCAGACTATGGTAACCTTGTCCTTTTGGAAAGCTCAGAAGGAAACATCTTATGGCAGAGTTATCAGCAACCATCAGATACATTACTGCCTGGTATGAAACTTTCAAGAAACACAATAACAGGTGTGGAAGTAAAGCTCACATCATGGAAAAGCCCTTCTAATCCATCAGTTGGGGGCTTCTCTTCTAGTGTTGTTAAACGCCTGAATATTCCTGAAGTGTTCATTTGGAATGAAACACGACCATACTGGCGCAGTGGTCCGTGGAATGGTAGGGTCTTTACAGGAATACCGACAATGAATTCTGGGTATCTTTATGGTTTCAAAGATGGAGATGATGGACAAGGAAATATTGATATATATTATACAATACCAAATGAGTCAGATTTCTTTTTGTATAAGCTGAATTCCCAAGGCCAATATGAAGAGACAAGGTGGGACGATGAGAAGAACGAAGTGTTTGTTACATGGAATAGCCAAGAATCCGTGTGTGATGTTTATGGTATCTGTGGGGCATTTGCAAGCTGTAGTTCACAGAGCTCACCAATATGCAGTTGTTTGAGAGGGTTTGAACCCAAGAACAAACAAGAATGGGATAGACAAAATTGGACAAGTGGGTGTGTTAGGAGGACACCTTTGCAGTGTGAAAGGGTCAAAGCTAAAAATACAAGTGTAGATACTAAGGTAGATGGCTTTTTGAAACTGCAGATGGCTAAAGTTCCAGATTTTGTAGAAGGGTTACTTGTTACACCAGACATGTGCAGAAGCCAATGCTTGGAGAATTGCTCTTGCGTTGCTTATTCTCTCGATCCTGGGATTGGCTGTATGTCTTGGACTCGGAATCTACTTGACATACAACAATTCTTGAGTGGAGGACTTGATTTATATGTTCGTGTAGCCCATACAGAACTTGCAAAACTTTGGCACTCTATTAAATCTACAAGGAAAAAGAACAACAGAGCTTTCCAACTATTTGATAAAGGTGAACCATTAGAAGATAATACAAGCGACAGTGTAATTGGAGAACTGTCACAAGTCAAACTTCAGGAGCTATCATTATTTGATTTTGAAAAGCTTGCAACTGCCACAAACAACTTCCACTTGTCCAACAAACTTGGACAGGGTGGTTTTGGTCCAGTATACAAGGGGAAACTACAAGATGGTCAGGAAATAGCAGTTAAAAGACTTTCTAAAGCATCCGGGCAAGGGTTAGAAGAATTCATGAATGAAGTATTGGTGCTTTGTAAGCTTCAACACCGCAATCTTGTAAAACTTCTTGGCTGTTGTGTTGATGGTGACGAAAAGATGTTGATATACGAATACATGCCAAACAAAAGTCTAGATGCATTTATCTTTGATCCAACAAAAAACAAACTCCTAGATTGGAGGATGCGCTGTAGCATATTAGAAGGAATAGCTCGAGGTTTGCTTTATCTTCACAGAGATTCTAGGCTAAGAATCATACACAGAGATCTGAAGGCAAGTAATATCTTGTTAGATGAAGAGTTGAATCCAAAAATATCAGACTTTGGTATGGCTAGAATTTTTGGAGGAAGTGAAGATCATGCCAATACTAGCAGGATTGTCGGAACTTAG 1971 0.3957 MMGFSSYANLFCVLFLLRCYLLHVGVAIDTITSSKSIKDPETLSSKDGNFILGFFSPQNSTNRYVGIWWKSPSIIIWVANRKEPLNDSSGVVTIYEDGNLVVLNGQKRVIWSSNVSNIASNTSSQFSDYGNLVLLESSEGNILWQSYQQPSDTLLPGMKLSRNTITGVEVKLTSWKSPSNPSVGGFSSSVVKRLNIPEVFIWNETRPYWRSGPWNGRVFTGIPTMNSGYLYGFKDGDDGQGNIDIYYTIPNESDFFLYKLNSQGQYEETRWDDEKNEVFVTWNSQESVCDVYGICGAFASCSSQSSPICSCLRGFEPKNKQEWDRQNWTSGCVRRTPLQCERVKAKNTSVDTKVDGFLKLQMAKVPDFVEGLLVTPDMCRSQCLENCSCVAYSLDPGIGCMSWTRNLLDIQQFLSGGLDLYVRVAHTELAKLWHSIKSTRKKNNRAFQLFDKGEPLEDNTSDSVIGELSQVKLQELSLFDFEKLATATNNFHLSNKLGQGGFGPVYKGKLQDGQEIAVKRLSKASGQGLEEFMNEVLVLCKLQHRNLVKLLGCCVDGDEKMLIYEYMPNKSLDAFIFDPTKNKLLDWRMRCSILEGIARGLLYLHRDSRLRIIHRDLKASNILLDEELNPKISDFGMARIFGGSEDHANTSRIVGT* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01615 656 ProSiteProfiles Bulb-type lectin domain profile. 28 147 IPR001480 -
Rops8g01615 656 SMART serkin_6 491 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01615 656 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 147 - -
Rops8g01615 656 ProSiteProfiles Protein kinase domain profile. 491 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01615 656 SUPERFAMILY Protein kinase-like (PK-like) 476 656 IPR011009 -
Rops8g01615 656 Gene3D Transferase(Phosphotransferase) domain 1 567 656 - -
Rops8g01615 656 ProSiteProfiles PAN/Apple domain profile. 340 425 IPR003609 -
Rops8g01615 656 SMART ntp_6 352 424 IPR003609 -
Rops8g01615 656 CDD PAN_AP_plant 336 425 - -
Rops8g01615 656 Gene3D - 23 148 IPR036426 -
Rops8g01615 656 Pfam Protein tyrosine and serine/threonine kinase 492 641 IPR001245 GO:0004672|GO:0006468
Rops8g01615 656 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 646 - -
Rops8g01615 656 SMART blect_4 34 150 IPR001480 -
Rops8g01615 656 SUPERFAMILY alpha-D-mannose-specific plant lectins 66 181 IPR036426 -
Rops8g01615 656 Pfam D-mannose binding lectin 75 176 IPR001480 -
Rops8g01615 656 Gene3D Phosphorylase Kinase; domain 1 466 566 - -
Rops8g01615 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 612 624 IPR008271 GO:0004672|GO:0006468
Rops8g01615 656 CDD B_lectin 34 150 IPR001480 -
Rops8g01615 656 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 567 656 - -
Rops8g01615 656 FunFam receptor-like serine/threonine-protein kinase SD1-8 465 566 - -
Rops8g01615 656 Pfam PAN-like domain 353 410 IPR003609 -
Rops8g01615 656 Pfam S-locus glycoprotein domain 209 319 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01615 Rops-Chr8 36163266 36165832 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01615 474 656 Receptor kinase-like Gene Family AT4G04500 66.667 2.01e-77 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops8g01615 PK_Tyr_Ser-Thr 7.2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01615 - - gmx:100779455 994.571