Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01611 ATGGGTTTCAGCAGCTATGCAAATTTGTTCTGTGCTTTATACATGCTGTTTTGTTATTTGTTACCCGTTGGTGTTGCCATAGACACCATCACATCATCTAAATCAATCAAGGACCCTGAAACTCTAAGTTCCAAAGATGGTAACTTCACCTTGGGGTTCTTCGGCCCTCAAAATTCTACAAATCGCTACGTTGGGATTTGGTGGAAGTCCCCATCCACAATCATATGGGTGGCTAACAGAAAAGAACCGCTAAATGATTCTTCTGGGGTTGTCACAATATCTGAAGATGGCAATCTTGTGGTATTGAATGGACAGAAACGAGTCATTTGGTCATCAAATGTGTCCAACATAGCATCAAATACCAGTTCCCAGTTTTCAGACTATGGTAACCTTGTCCTTTTGGAAAGCACAAAAGGAAACATCTTATGGCAGAGTTATCAGCAACCTTCAGATACATTATTGCCTGGTATGAAACTTTCAAGAAACACAATAGCAGGTGTGGAAGTAAGGCTCACATCATGGAAAAGCCCTTCTAATCCATCAGTTGGGGGCTTCTCTTCTGGTGTTGTTAAACGCCTAAATATTCCTGAAGTGTTCATTTGGAATGAAACACGACCATACTGGCGCAGTGGTCCGTGGAATGGTAGGGTCTTTACAGGAATACCGACAATGGATTCTGGGTATCTTTTTGGTTTCAAAGATGGAGATGATGGACAAGGAAATATTGATATATATTATACAATACCAAATGAGTCAGAATTCTTGTTGTATAAGCTGAATTCCCAAGGCCAATATGAAGAGACAAGGTGGGACGATGAGAAGAATGAAGTGTTTGTTACATGGAATAGCCAAGAATCCGTGTGTGATGTTTATGGTATCTGTGGGGCATTTGCAAGCTGTAGTTCACAGAGCTCACCAATATGCAGTTGTTTGAGAGGGTTTGAACCCAAGAACAAACAAGAATGGGATAGACAAAATTGGACAAGTGGGTGTGTTAGGAGGACACCTTTGCAGTGTGAAAGGGTCAAAGCTAAAAATACAAGTGTAGATACTAAGGTAGATGGCTTTTTGAAACTGCAGATGGCTAAAGTTCCAGATTTTGTAGAAGGGTCACCTATTACACCAGACATGTGCAGAAGCCAATGCTTGGAGAATTGCTCTTGCGTTGCTTATTCTCTCGATCCTGGGATTGGCTGTATGTCTTGGACTCGGAATCTACTTGACATACAACAATTCTTGAGTGGAGGACTTGATTTATATGTTCGTGTAGCCCATACAGAACTTGCAAAACTTTGGCACTCTATTAAATCTACAAGGAAAAAGAACAACAGAGCTTTCCAACTATTTGATAAAGGTGAACCATTAGAAGATAATACAAGCGACAGTGTAATTGGAGAACTGTCACAAGTCAAACTTCAGGAGCTATCATTATTTGATTTTGAAAAGCTTGCAACTGCCACAAACAACTTCCACTTGTCCAACAAACTTGGACAGGGTGGTTTTGGTCCAGTATACAAGGGGAAACTACAAGATGGTCAGGAAATAGCAGTTAAAAGACTTTCTAAAGCATCCGGGCAAGGGTTAGAAGAATTCATGAATGAAGTATTGGTGCTTTGTAAGCTTCAACACCGCAATCTTGTAAAACTTCTTGGCTGTTGTGTTGATGGTGACGAAAAGATGTTGATATACGAATACATGCCAAACAAAAGTCTAGATGCATTTATCTTTGATCCAACAAAAAACAAACTCCTAGATTGGAGGATGCGCTGTAGCATATTAGAAGGAATAGCTCGAGGTTTGCTTTATCTTCACAGAGATTCTAGGCTAAGAATCATACACAGAGATCTGAAGGCAAGTAATATCTTGTTAGATGAAGAGTTGAATCCAAAAATATCAGACTTTGGTATGGCTAGAATTTTTGGAGGAAGTGAAGATCATGCCAATACTAGCAGGATTGTCGGAACTTAG 1968 0.4004 MGFSSYANLFCALYMLFCYLLPVGVAIDTITSSKSIKDPETLSSKDGNFTLGFFGPQNSTNRYVGIWWKSPSTIIWVANRKEPLNDSSGVVTISEDGNLVVLNGQKRVIWSSNVSNIASNTSSQFSDYGNLVLLESTKGNILWQSYQQPSDTLLPGMKLSRNTIAGVEVRLTSWKSPSNPSVGGFSSGVVKRLNIPEVFIWNETRPYWRSGPWNGRVFTGIPTMDSGYLFGFKDGDDGQGNIDIYYTIPNESEFLLYKLNSQGQYEETRWDDEKNEVFVTWNSQESVCDVYGICGAFASCSSQSSPICSCLRGFEPKNKQEWDRQNWTSGCVRRTPLQCERVKAKNTSVDTKVDGFLKLQMAKVPDFVEGSPITPDMCRSQCLENCSCVAYSLDPGIGCMSWTRNLLDIQQFLSGGLDLYVRVAHTELAKLWHSIKSTRKKNNRAFQLFDKGEPLEDNTSDSVIGELSQVKLQELSLFDFEKLATATNNFHLSNKLGQGGFGPVYKGKLQDGQEIAVKRLSKASGQGLEEFMNEVLVLCKLQHRNLVKLLGCCVDGDEKMLIYEYMPNKSLDAFIFDPTKNKLLDWRMRCSILEGIARGLLYLHRDSRLRIIHRDLKASNILLDEELNPKISDFGMARIFGGSEDHANTSRIVGT* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01611 655 CDD PAN_AP_plant 335 424 - -
Rops8g01611 655 Gene3D - 23 147 IPR036426 -
Rops8g01611 655 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 146 - -
Rops8g01611 655 Gene3D Phosphorylase Kinase; domain 1 465 565 - -
Rops8g01611 655 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 645 - -
Rops8g01611 655 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 566 655 - -
Rops8g01611 655 ProSiteProfiles Protein kinase domain profile. 490 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01611 655 SMART ntp_6 351 423 IPR003609 -
Rops8g01611 655 SUPERFAMILY Protein kinase-like (PK-like) 475 655 IPR011009 -
Rops8g01611 655 ProSiteProfiles PAN/Apple domain profile. 339 424 IPR003609 -
Rops8g01611 655 Pfam Protein tyrosine and serine/threonine kinase 491 640 IPR001245 GO:0004672|GO:0006468
Rops8g01611 655 FunFam receptor-like serine/threonine-protein kinase SD1-8 464 565 - -
Rops8g01611 655 SMART serkin_6 490 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01611 655 CDD B_lectin 33 149 IPR001480 -
Rops8g01611 655 SMART blect_4 33 149 IPR001480 -
Rops8g01611 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Rops8g01611 655 Pfam D-mannose binding lectin 73 175 IPR001480 -
Rops8g01611 655 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Rops8g01611 655 Pfam PAN-like domain 352 409 IPR003609 -
Rops8g01611 655 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 180 IPR036426 -
Rops8g01611 655 Pfam S-locus glycoprotein domain 208 318 IPR000858 GO:0048544
Rops8g01611 655 Gene3D Transferase(Phosphotransferase) domain 1 566 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01611 Rops-Chr8 36119308 36121871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01611 473 655 Receptor kinase-like Gene Family AT4G04500 66.667 1.52e-77 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops8g01611 PK_Tyr_Ser-Thr 7.1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01611 - - gmx:100779455 1006.9