Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01610 ATGTCGTGGAAAAGCCCTTCTAATCCATCCATTGGGAGCTTCTCTTCTAGTATTGTTGAACGCATAAACAAGCCTGAAGTGTTCATTTGGGATGAAACTCAACCATACTGGCGCAGTGGTCCGTGGAATGGTGGAGTCTTCATAGGGATACCGACAATGGAATTTGGGTATCGTAACGGTCTTCAAGAAGGAGATGATGGAGAAGGAAATATTGACATCTATTATACAATACAAAATGGGTTAGAATTCATGATGTATAAACTAAATTCACAAGGCCAATATGAGGAGACATTGTGGCATGACGAGAAGAATGAAGTGCTAGTTACATGGACTAGCCAACAATTTGAGTGTGATGTTTATGGTATGTGTGGTGCATTTGCAAGCTGTAGTTCACATAGCACACCAATATGCAGCTGCTTGCGAGGGTTTGAACCCAGGAACAAACAAGAGTGGAATAGTCAAAACTGGACAAGTGGGTGTGTCAGGAGGACACCTTTGCAGTGTGAAAGGGTGAAAGCTAAAAACACAAGTGTAGATGCAAAGGCAGATGATTTTTTGAAACTACAGATGGTTAAAATTCCAGACTATGCAGAAGGGTCATTTGTTACACAAGACAAGTGTAGAAGCCAATGCTTGGAGAATTGCTCATGCATTGCCTATTCTCATGATGCTGGGATTGGCTGTATGTATTGGACTGGGAATCTACTTGACATACAACAATTCTCAAGTGGAGGACTTGATCTTTATGTTCGTGTAGCCTATACAGAACTTGATAAAGGGACAAACACAACAATGATCATTACAATTACAGTGACAATAGGAACTGTCATATTTGTTATCTTTGCATGTATAATGTGGAGAAGGACTTCGTCAAAGCATCTAGCTAAGTTGTGGCACTCTAAATCAACAAGGAAAAAGAACAACAAAGTTTTTCGACTATTTAATAAAGGTGAAACATCAGAAAATTATACAAGAGACAATGTAATTGGAGAACTGTCAGTAATTAAACTCCAGGAGCTATTACTATTTGACTTTGAAAAGCTTGCAACAACAACAAACAACTTCCACTTGTCCAACAAACTTGGACAGGGTGGTTTTGGTCCGGTATACAAGGGGAAACTACAAGATGATCAGGAAATAGCAGTTAAAAGACTTTCTAGAGCATCTGGACAAGGGCTAGAAGAATTCATGAATGAAGTAATGGTGCTTTGTAAGCTTCAACACCGCAATCTTGTAAGACTTCTTGGTTGTTGTATTGAAGGTGACGAAAAGATGTTGATATATGAGTACATGCCAAACAAAAGTCTGGATGCATTTGTCTTTGATCCATCAAAAAATAAACTCCTACATTGGAGGACGCGCTTTAGCATAATAGAAGGAGTAGCTCGAGGATTGCTTTATCTTTACCGGGATTCCAGACTAAAAATCATACATAGAGATTTGAAGGCAAGTAATATTTTGTTGGACAAGGAGCTAAATCCGAAAATATCCGACTTTGGTATGGCTAGAATCTTTGGAGGGAGTGAAGATCAGGCAATTACTAGAAGAATTGGTGGTACTTATGGTTATATGTCTCCTGAATATGCAATGGAAGGATTATTTTCTGAGAAATCAGATGTTTTTAGCTTTGGTGTTTTGACACTAGAGATTGTTATCGGGAGAAGAAAATCAAGCTTTTACAACAATGAGCATTCTCTAAGCCTTTTAGGATTTGTTTGGCTAAAATGGAGGGAAGACGATATTTTATCTTTAATTGATCCAGGAATACATGATCTTCATCATAAGCATATTTTAAGGTGTATACATGTAGGACTTTTGTGTGTACAAGAGCTAGCTATAGATAGGCCCACTATGGCTGTAGTAATTTCTATGCTTAACAGTGAGGTTGCGTTTCTTCCTCCTCCAAGCCAACCTGCATTTATCTTGAGGCAGAATATGTTGAAAGTGTCGGCTGAAGAAAGTCGTAGATTCTGTTCCATCAATACTGTCAGTGTTACAGAGATTAGTGGAAGATAG 2016 0.3859 MSWKSPSNPSIGSFSSSIVERINKPEVFIWDETQPYWRSGPWNGGVFIGIPTMEFGYRNGLQEGDDGEGNIDIYYTIQNGLEFMMYKLNSQGQYEETLWHDEKNEVLVTWTSQQFECDVYGMCGAFASCSSHSTPICSCLRGFEPRNKQEWNSQNWTSGCVRRTPLQCERVKAKNTSVDAKADDFLKLQMVKIPDYAEGSFVTQDKCRSQCLENCSCIAYSHDAGIGCMYWTGNLLDIQQFSSGGLDLYVRVAYTELDKGTNTTMIITITVTIGTVIFVIFACIMWRRTSSKHLAKLWHSKSTRKKNNKVFRLFNKGETSENYTRDNVIGELSVIKLQELLLFDFEKLATTTNNFHLSNKLGQGGFGPVYKGKLQDDQEIAVKRLSRASGQGLEEFMNEVMVLCKLQHRNLVRLLGCCIEGDEKMLIYEYMPNKSLDAFVFDPSKNKLLHWRTRFSIIEGVARGLLYLYRDSRLKIIHRDLKASNILLDKELNPKISDFGMARIFGGSEDQAITRRIGGTYGYMSPEYAMEGLFSEKSDVFSFGVLTLEIVIGRRKSSFYNNEHSLSLLGFVWLKWREDDILSLIDPGIHDLHHKHILRCIHVGLLCVQELAIDRPTMAVVISMLNSEVAFLPPPSQPAFILRQNMLKVSAEESRRFCSINTVSVTEISGR* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01610 671 SUPERFAMILY Protein kinase-like (PK-like) 338 625 IPR011009 -
Rops8g01610 671 SMART serkin_6 355 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01610 671 Pfam Protein tyrosine and serine/threonine kinase 356 556 IPR001245 GO:0004672|GO:0006468
Rops8g01610 671 Gene3D Transferase(Phosphotransferase) domain 1 431 630 - -
Rops8g01610 671 CDD STKc_IRAK 361 626 - -
Rops8g01610 671 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 106 650 - -
Rops8g01610 671 Gene3D Phosphorylase Kinase; domain 1 325 430 - -
Rops8g01610 671 CDD PAN_AP_plant 164 253 - -
Rops8g01610 671 ProSiteProfiles PAN/Apple domain profile. 168 253 IPR003609 -
Rops8g01610 671 Pfam PAN-like domain 181 238 IPR003609 -
Rops8g01610 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Rops8g01610 671 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 431 633 - -
Rops8g01610 671 FunFam receptor-like serine/threonine-protein kinase SD1-8 301 430 - -
Rops8g01610 671 SMART ntp_6 180 252 IPR003609 -
Rops8g01610 671 Pfam S-locus glycoprotein domain 37 146 IPR000858 GO:0048544
Rops8g01610 671 ProSiteProfiles Protein kinase domain profile. 355 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01610 Rops-Chr8 36095906 36098558 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01610 339 671 Receptor kinase-like Gene Family AT4G21410 56.637 1.59e-121 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops8g01610 PK_Tyr_Ser-Thr 7.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01610 - - mtr:25498365 977.237