Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01597 ATGGTTGAGAGAAGATACGACAGTGAGTTTAACTACGTGTTCCTCTGTGTTTTGTCGATGTTTCTTATCTCTGGGCTCGTCGTAATGACGTACTCGCAGCTCCGACTAGAGAGCACGGTGGTGTCGGTGGGGAGCTTTGAGTTCGAGGCGTTTTTGAAGGCCATTGAGAAGCACAAGAAAAAAAACAAAAAGTCATTTTTTTGCCCTATCAAAGCACCCCACCGCAGCATCCCCTCCCTGTTTCGTTTCGTCAAAGCACCACCAGCTCCATCTCGCAGGCCCACCGCAGTAGCACCAGCTCCATCTCGCAGCCCCTTCGTTGCAGCACCAGCTCCACCGCAGCTCCACCGAAGCTCCACCGCAGCCAGTGTTGCCATAGACACCATCACTTCATCCAAGTTCATCAAGGAACCTGAAACTCTAAGCTCCAATGGTGGTAACTTCACCTTGGGCTTCTTCAGCCCTGAAAATTCTACAAATCGCTACGTGGGAATTTGGTGGCAGCCCCAATTCACAATCATATGGGTGGCTAACAGAAACCAACCTCTCAGGGATTCTTCTGGGATTGTTACAATATCTGAGGATGGCAATCTTGTGGTATTGAGTGGACAGAAACAGGTCATTTGGTCATCCAATGTGTCCAGTATTTCAATCAATTCTAGTTGTAAACTTTTAGATTCTGGCAACCTTGTACTACTTGAAAGCACAACAGGAAGCAACATATGGGAGAGTTTCCAGCATCCTTCCAATGTAATGTTGCCCAATATTAAACTTTCAAGCAATAAAAGAACAGGTGAGAAAGTAAAGCTAACATCATGGAAAAGCCCTTCTAATCCATCAATTGGGAACTTATCTTTAAGTGTTGAACGCCTTAGTGTACCAGAAGTGTTCATTTGGAATGAAACTCGCCCATACTGGCTGTTACGCATAAAACACACTTAA 942 0.4565 MVERRYDSEFNYVFLCVLSMFLISGLVVMTYSQLRLESTVVSVGSFEFEAFLKAIEKHKKKNKKSFFCPIKAPHRSIPSLFRFVKAPPAPSRRPTAVAPAPSRSPFVAAPAPPQLHRSSTAASVAIDTITSSKFIKEPETLSSNGGNFTLGFFSPENSTNRYVGIWWQPQFTIIWVANRNQPLRDSSGIVTISEDGNLVVLSGQKQVIWSSNVSSISINSSCKLLDSGNLVLLESTTGSNIWESFQHPSNVMLPNIKLSSNKRTGEKVKLTSWKSPSNPSIGNLSLSVERLSVPEVFIWNETRPYWLLRIKHT* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01597 313 CDD B_lectin 132 248 IPR001480 -
Rops8g01597 313 SUPERFAMILY alpha-D-mannose-specific plant lectins 164 279 IPR036426 -
Rops8g01597 313 SMART blect_4 132 248 IPR001480 -
Rops8g01597 313 ProSiteProfiles Bulb-type lectin domain profile. 126 245 IPR001480 -
Rops8g01597 313 Gene3D - 2 62 - -
Rops8g01597 313 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 122 245 - -
Rops8g01597 313 Gene3D - 121 246 IPR036426 -
Rops8g01597 313 Pfam D-mannose binding lectin 172 274 IPR001480 -
Rops8g01597 313 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 20 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01597 Rops-Chr8 35852808 35866318 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01597 8 59 Monolignol Biosynthesis Gene Families AT4G05160 50.000 8.86e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01597 - - pvu:PHAVU_008G127000g 283.878