Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01586 ATGTCAGCTTCGGAGAGCAGCCGAGAAACGCTAGCCGGCTTGACACTTAACGACGTCTTGGCCAACCAGAAGAGACCATCTGCCTCACCGACGAACCAGCAACATCATCCCAAGAGCCGAACCCTCTTAGATATCATCAAAGAAGACGAAAGCAACAAAAAGGACCGCAGATCTTGGAAAGCCTTCAAGGACAAGCTTCGGCTCAAGCGTGCTGGCTCTGCTTGGACTTCATCAATTCATATTCCAACTTCGGATATCCCCACTCCAAACAGTAGAAACTTTTCCCACTTCGGTCGTCACAACTCAGTCCGATTCCATACTCAGCCCGACTCGGCCATGTCAAATCACTACATGACTCACCAAGTCGAATACCTCGACTCTACGGAGGACTCCGGTGGTGCTCCGGCAACGAAGGCACAGTTCTCTCGCCGGAGCTCCTCCCATTTCACCAGCGACCCATCGGAAAACTCCGGCTCCGGGAATCTCCGGCCGCAGCTTTCACGGCGGAACTCCACCACCATGCCGTCGGAGCCGTACCGGCGGGGGCGCGTGGTGACTTTCCGGGACAGCTTCGACGACGAAGAGACGGAAGACGGCGAGAAGGTAGCGGATACGGGGAGGACGATGTCGGCGAGGGAGGCGGTGGCGGCGCAGGAGGCTGCGGAAGCTGCGGCGGCGGCGGCTGCTGCTGAGGAGGAGGAGGCGGCGGGGAGAGCTCCGGGGACGATGTCACTGATGGATTTGCTGGAGGAGACTGATAGAGAAATGGGGTTGGAAGGGTCAAGGTATATATTGAGTGATGATGAAGACTTTGATGAGGATGAAGAGGCAGGAGGAGAAGATGGAGATGGAGAAGGTGCAATGGAATACACTTGCTGTATTTGCATGGTGAGGCATAAGGGTGCTGCTTTTATACCTTGTGGTCATACTTTCTGCAGGATGTGTTCAAGGGAGCAAATGGTGAGCAAGGGGAATTGCCCAATCTGCAATAATTTCATTTTAGAGATTCTTGACATTTTTTGA 1023 0.5415 MSASESSRETLAGLTLNDVLANQKRPSASPTNQQHHPKSRTLLDIIKEDESNKKDRRSWKAFKDKLRLKRAGSAWTSSIHIPTSDIPTPNSRNFSHFGRHNSVRFHTQPDSAMSNHYMTHQVEYLDSTEDSGGAPATKAQFSRRSSSHFTSDPSENSGSGNLRPQLSRRNSTTMPSEPYRRGRVVTFRDSFDDEETEDGEKVADTGRTMSAREAVAAQEAAEAAAAAAAAEEEEAAGRAPGTMSLMDLLEETDREMGLEGSRYILSDDEDFDEDEEAGGEDGDGEGAMEYTCCICMVRHKGAAFIPCGHTFCRMCSREQMVSKGNCPICNNFILEILDIF* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01586 340 MobiDBLite consensus disorder prediction 133 177 - -
Rops8g01586 340 SMART ring_2 292 329 IPR001841 -
Rops8g01586 340 SUPERFAMILY RING/U-box 291 336 - -
Rops8g01586 340 Coils Coil 214 234 - -
Rops8g01586 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 340 IPR013083 -
Rops8g01586 340 PANTHER OS01G0917900 PROTEIN 7 340 - -
Rops8g01586 340 MobiDBLite consensus disorder prediction 1 39 - -
Rops8g01586 340 Pfam Zinc finger, C3HC4 type (RING finger) 290 333 - -
Rops8g01586 340 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Rops8g01586 340 MobiDBLite consensus disorder prediction 1 41 - -
Rops8g01586 340 CDD RING-HC 290 329 - -
Rops8g01586 340 MobiDBLite consensus disorder prediction 126 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01586 Rops-Chr8 35631507 35634359 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01586 1 340 C3H Transcription Factor Family AT3G07120 38.919 3.08e-62 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01586 - - gmx:100795449 415.231