Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01560 ATGCTAAGCATTGTTTCATGCAGATGGAGACAACCTGGCCATCATGTTCATGCTCAAACCTCACCACTTGCTCCCATGCACACTAGGTGCAACTCATTCTCGTGCTCCTCGCACCCTCACATAACCACCTTATTCAAACTTCATGATGCCAAGAACCCTAACCTTAAGAAAGATGAGCAGCCTTCCCATGTGCTTCACACGCAACCTCAAACTCAGCCTGACGGTGCCTCCGCTACACCTAATCCCTGCGAACGGGTAGAGAAGAGGAGCATAAACCCGGAGCTATGTGAACAGGTTGCAGCGTCTTTGAAGAAAGATGTGGATGCCCAAACTCCCAACTATCCCTCTCTTCCCTCTAAGTTACTCTGTCTCCTTCACAATGTCACCTTGCATGCTGATCCTGAAACGGATGAAGTATATGCTCAGATGACACTTCAACTAGTTCTTTCTTTTGACAAGGATGCTTTGTTAAGATCAGATCTTGCTCTCAAGTCAAGTAAGGCACAACCTGAGTTTTTCTGTAAACAAATCACGGCAAGTGATACAAGTACTCATGGAGTTTTCTCTGTACCTCGCCGTGCAGCTGAGAAGATTTTCCCCCTCTTGATTATTCTATGCAACCTCCTGCTCAAGAACTTGTGGCTAGGGACCTGCATGATACTGTTTGAACATTCCGACATATATACCGTGGGCAACCAAAACGTCACCTTCCACTTAAAGTTCTGTCAAAATGTAGGCCTTATCTTTCTTTCCATGATCGTTCCTTACTTGCTATGA 777 0.4556 MLSIVSCRWRQPGHHVHAQTSPLAPMHTRCNSFSCSSHPHITTLFKLHDAKNPNLKKDEQPSHVLHTQPQTQPDGASATPNPCERVEKRSINPELCEQVAASLKKDVDAQTPNYPSLPSKLLCLLHNVTLHADPETDEVYAQMTLQLVLSFDKDALLRSDLALKSSKAQPEFFCKQITASDTSTHGVFSVPRRAAEKIFPLLIILCNLLLKNLWLGTCMILFEHSDIYTVGNQNVTFHLKFCQNVGLIFLSMIVPYLL* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01560 258 Gene3D - 171 240 IPR015300 -
Rops8g01560 258 MobiDBLite consensus disorder prediction 52 83 - -
Rops8g01560 258 MobiDBLite consensus disorder prediction 64 78 - -
Rops8g01560 258 SUPERFAMILY DNA-binding pseudobarrel domain 162 202 IPR015300 -
Rops8g01560 258 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 96 202 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01560 Rops-Chr8 35212696 35213674 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01560 73 202 B3 DNA Binding Superfamily AT5G20730 56.129 2.96e-45 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01560 - - mnt:21391597 201.83