Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01548 ATGGAAGAAGGCTTGGATATTCCTCAAGCCCAGGAGATGAACGAGGACTTCGATCTCCCCGAAGACAAGGTCGGTGAGGAGACACCCATAGGCAATCAAGGCCTCAAGAAGAAGCTCCTCAAAAAAGGTGAAGGTTGGGACACCCCCGAAGTCGGCGATGAAGTCCAAGTTCACTACACGGGGACTTTGCTTGATGGAACTAAGTTCGATTCCAGCCGCGACAGGGATACTCCTTTCAGCTTCACGCTTGGACAAGGGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAAAATGCACTTTTCACCATCCCTCCTGAGCTAGCTTATGGTGAATCTGGTTCCCCTCCAACAATTCCTCCTAATGCGACACTCCAATTCGATGTTGAGCTGCTGTCTTGGACTAGTGTGAAGGACATTTGTAAGGATGGTGGTATATTTAAGAAGATACTTACTGAGGGGGAGAAATGGGAGAACCCCAAGGATCCTGATGAAGTATTGGTTAAGTATGAGGTTCGTCTGGAAGATGGAAAGCTTGTAGCGAAGTCTGATGGAGTGGAGTTCACTGTCAGAGAGGGTCATTATTGTCCTGCATTGTCTACGGCTGTTAAGACCATGAAGAAAGGGGAGAAAGTTATTTTGACAGTAAAGCCACAATATGGATTTGGTGAGAAAGGAAAGCCAGCGCATGGTGATGAAGGTGCAGTTCCACCAAATGCAACATTGCAGATTACTCTCGAGTTAGTTTCTTGGAAGACCGTGTCAGAAGTAACTGGTGACAAAAGGGTCATAAAGAAGATCCTCAAGGAAGGGGAAGGATATGATCGACCAAATGATGGGGCCATTGTGAAATTGAAACTACTTGGTAAGCTGCAAGATGGTACTTTCTTTTTCAAAAAGGGCCATGACGAAGAAGAGCTGTTTGAATTCAAAACAGATGAGGAGCAAGTCATTGATGGACTCGATAGAGCTGTGATGACTATGAAGAAGGGTGAGGTAGCATTATTGACTATTACACCTGAGTATGCATTTGGTTCATCTGAGTCCCAGCAGGAGTTGGCTTTGATTCCTCCAAACTCAACCGTGTATTATGAAGTTGAGCTAGTGTCATTTGAGAAGGAGAAGGAGTCTTGGGATATGAACACTCAAGAGAAGATTGAAGCTGCTGGTAAGAAGAAAGAAGAAGGGAATGTGTTGTTTAAAGCTGGTAAATATGCAAGAGCTTCCAAAAGATATGAAAAGGCTGTGAAGTACATAGAGTATGATTCTGCGTTCAGCGAGGAGGAGAAAAAGCAGTCAAAGAACTTCAAGATTGCTTGCAATCTAAACAATGCTGCTTGCAAGTTGAAATTAGAAGAGTATAAAGAAGCAGAGAAATTGTGTACTAAGGTGTTGGACCTTGAGAGCACAAACGTAAAAGCCCTCTATAGAAGGGCACAGGCATTTATGCAGTTGGCTGACTTGGATTTGGCTGAATTTGACATCAAGAAAGCTCTTGAGATTGACCCTGATAACAGGGAAGTCAAACTTGAGTACAAGACTTTGAAGGAAAAGGTGAAGGAGAATAATAAAAAGGAGGCGAAATTTTATGGAAATATGTTCAGCAAGTTGACAAAGACTGCATCCTGA 1644 0.4325 MEEGLDIPQAQEMNEDFDLPEDKVGEETPIGNQGLKKKLLKKGEGWDTPEVGDEVQVHYTGTLLDGTKFDSSRDRDTPFSFTLGQGQVIKGWDEGIKTMKKGENALFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKILTEGEKWENPKDPDEVLVKYEVRLEDGKLVAKSDGVEFTVREGHYCPALSTAVKTMKKGEKVILTVKPQYGFGEKGKPAHGDEGAVPPNATLQITLELVSWKTVSEVTGDKRVIKKILKEGEGYDRPNDGAIVKLKLLGKLQDGTFFFKKGHDEEELFEFKTDEEQVIDGLDRAVMTMKKGEVALLTITPEYAFGSSESQQELALIPPNSTVYYEVELVSFEKEKESWDMNTQEKIEAAGKKKEEGNVLFKAGKYARASKRYEKAVKYIEYDSAFSEEEKKQSKNFKIACNLNNAACKLKLEEYKEAEKLCTKVLDLESTNVKALYRRAQAFMQLADLDLAEFDIKKALEIDPDNREVKLEYKTLKEKVKENNKKEAKFYGNMFSKLTKTAS* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01548 547 Gene3D Tetratricopeptide repeat domain 380 537 IPR011990 GO:0005515
Rops8g01548 547 SMART tpr_5 394 427 IPR019734 GO:0005515
Rops8g01548 547 SMART tpr_5 477 510 IPR019734 GO:0005515
Rops8g01548 547 SMART tpr_5 443 476 IPR019734 GO:0005515
Rops8g01548 547 SUPERFAMILY TPR-like 382 541 IPR011990 GO:0005515
Rops8g01548 547 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 285 377 IPR001179 GO:0003755
Rops8g01548 547 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 52 140 IPR001179 GO:0003755
Rops8g01548 547 SUPERFAMILY FKBP-like 261 394 - -
Rops8g01548 547 PANTHER PEPTIDYLPROLYL ISOMERASE 7 141 - -
Rops8g01548 547 Pfam Tetratricopeptide repeat 477 510 IPR001440 GO:0005515
Rops8g01548 547 FunFam Peptidylprolyl isomerase 25 143 - -
Rops8g01548 547 SUPERFAMILY FKBP-like 20 151 - -
Rops8g01548 547 Coils Coil 510 530 - -
Rops8g01548 547 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 168 257 IPR001179 GO:0003755
Rops8g01548 547 FunFam Peptidylprolyl isomerase 144 257 - -
Rops8g01548 547 ProSiteProfiles TPR repeat profile. 477 510 IPR019734 GO:0005515
Rops8g01548 547 FunFam Peptidylprolyl isomerase 258 379 - -
Rops8g01548 547 Gene3D - 143 257 IPR046357 GO:0003755
Rops8g01548 547 MobiDBLite consensus disorder prediction 1 31 - -
Rops8g01548 547 SUPERFAMILY FKBP-like 144 260 - -
Rops8g01548 547 Gene3D - 28 142 IPR046357 GO:0003755
Rops8g01548 547 Gene3D - 258 378 IPR046357 GO:0003755
Rops8g01548 547 FunFam Peptidylprolyl isomerase 382 537 - -
Rops8g01548 547 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 48 137 IPR001179 GO:0003755
Rops8g01548 547 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 163 254 IPR001179 GO:0003755
Rops8g01548 547 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 281 374 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01548 Rops-Chr8 34907122 34912157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01548 23 542 Calmodulin-binding Proteins AT3G25230 81.574 0.0 865
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01548 K09571 - gmx:100812632 929.472