Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01545 ATGGAAAATCAATTCTTTTCTAATGCTGGTGTCCCCCCTCAACTGCATTTTGAGCCTTCACCACAACCTTCAATGCCCACTTGGCATTCACTTTCATCTCCCATGGATGTTCAAGTAACGGCTTTGAATTGTTCATCTGAGCAGAACCAAGATTGCTTTTACACCTCAACATGGGAGAAGTCAACGGATCATGGTCTTCAGTTTGATTCTGCACTGAGTTCAATGGTGTCTTCTCCTGCAGCTTCAAATTCCAACATGTCCAATGAGAATTTTGTTATCAGGGAACTGATTGGAAAATTGGGAAACATTGGTGGTTGCTCTGATGAGATCTCACCTCATTCTCAGCCTTTGGTTGCTGCATCTTCCTACATCAATGGCAATAATAGCACCAATACTTCATGTTATAGCACCCCTTTGAGTTCTCCTCCTAAGGTGAACATCCCCACAGTGATGAACCAATTAGTGAAAGAAAACTTGCCCGGTTTGGGGAAATCAGTGGCCTTGAATTCCAGTGTGGCAGAATTCTCAGCTGATCCTGGGTTTGCAGAGAGGGCTGCAAAGTTTTCTTGCTTTGGAAGTAGGAGTTGCAATGGCAGGACTAGTCAATTGGGGATGAACAATGCTGAATTGACTCAGAGATCTACTTCTTTGATGGAAAATGGGAAGCTCCCTAGAGTCTCAAGTAGTCCATCACTGAAAGCACTTGGATCTCAAATGGGTGCCCAAGAGAACAAGAATTCTTCTCAATTGCAGGATCTAATGGAAGTTGTCAATTCTCAAGAGGAATCTACAATCTCTGAACAAACCCCAAATGGGGGAGATAATGGGGTAAAACCTTCCCCTCATGTGAATTCCAGGAAAAGAAAAGCTTCTTCCAAAGGAAAAGCCAAGGAAACTTCAACCTCTAACAATCCTCCCATGGCTGCTGAAGCTAGTGAAGACTCAAATGCAAAACGCAGCAAGCCAAATGAGGGTGAGGGAAATGAAAATGGCCAAGTGAAGGCAGAGGAAGATTCCAAAGGTGGTAATAGTAATGCAGGTGATGAGAAACAGAACAAGAGTAACTCAAAACCACCTGAGCCTCCAAAGGATTACATTCATGTTAGAGCAAGAAGAGGTCAAGCCACTGATAGCCATAGTCTTGCAGAAAGGGTTCGGAGGGAGAAAATCAGTGAGAGGATGAAGCTTCTCCAAGATCTTGTCCCAGGTTGCAATAAGGTCACTGGAAAAGCACTTATGCTTGATGAAATTATAAACTATGTCCAGTCATTGCAGCGTCAAGTTGAGTTCCTGTCTATGAAATTGGCTTCTGTCAACACGAGGCTGGATTTTAGTATTGAGAGTCTAATCTCAAAAGATATATTTCAATCAAATAATTCTTTGGCAAATCCAATACTCCCACTAGATTCCTCAGCACCAGCCTTTTATGGGCAACAACAGCCACAGCAAAACCCAGCAATCCACAATAACATTCCTAATGGAACTGTGACCCACAGTTCAGTGGACCCATTAGATACTGGTCTATGCCAAACCCTTGGCATGCAGTTACCTCCCCTAAATGGGATTAATGAAGGTGTCTCTCAGTTTCCACTAACTTTCTCTGAGGATGACCTCCATACCATTGTTCAGATGGGATTTGGCCAAACTGCAAATAGGAAAACACCAATACAATTTCAGAGTTTCAACGGCTCAAATCAAGTACCCCTATGA 1710 0.4304 MENQFFSNAGVPPQLHFEPSPQPSMPTWHSLSSPMDVQVTALNCSSEQNQDCFYTSTWEKSTDHGLQFDSALSSMVSSPAASNSNMSNENFVIRELIGKLGNIGGCSDEISPHSQPLVAASSYINGNNSTNTSCYSTPLSSPPKVNIPTVMNQLVKENLPGLGKSVALNSSVAEFSADPGFAERAAKFSCFGSRSCNGRTSQLGMNNAELTQRSTSLMENGKLPRVSSSPSLKALGSQMGAQENKNSSQLQDLMEVVNSQEESTISEQTPNGGDNGVKPSPHVNSRKRKASSKGKAKETSTSNNPPMAAEASEDSNAKRSKPNEGEGNENGQVKAEEDSKGGNSNAGDEKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLDFSIESLISKDIFQSNNSLANPILPLDSSAPAFYGQQQPQQNPAIHNNIPNGTVTHSSVDPLDTGLCQTLGMQLPPLNGINEGVSQFPLTFSEDDLHTIVQMGFGQTANRKTPIQFQSFNGSNQVPL* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01545 569 FunFam Basic helix-loop-helix transcription factor 371 443 - -
Rops8g01545 569 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 374 424 IPR011598 GO:0046983
Rops8g01545 569 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 260 488 IPR024097 GO:0006355
Rops8g01545 569 MobiDBLite consensus disorder prediction 217 275 - -
Rops8g01545 569 MobiDBLite consensus disorder prediction 314 344 - -
Rops8g01545 569 Pfam Helix-loop-helix DNA-binding domain 378 425 IPR011598 GO:0046983
Rops8g01545 569 MobiDBLite consensus disorder prediction 474 499 - -
Rops8g01545 569 CDD bHLH_AtBPE_like 364 449 - -
Rops8g01545 569 MobiDBLite consensus disorder prediction 1 31 - -
Rops8g01545 569 MobiDBLite consensus disorder prediction 296 310 - -
Rops8g01545 569 Coils Coil 421 441 - -
Rops8g01545 569 SMART finulus 380 430 IPR011598 GO:0046983
Rops8g01545 569 Gene3D - 371 446 IPR036638 GO:0046983
Rops8g01545 569 MobiDBLite consensus disorder prediction 217 365 - -
Rops8g01545 569 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 372 443 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01545 Rops-Chr8 34869630 34872827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01545 1 533 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 43.796 1.83e-111 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops8g01545 HLH 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01545 - - gmx:100812081 884.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01545 8 34869630 34872827 Rops4g00231 4 7519294 7522306 PCT